Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0593 ATGGGTATCTCCAGCCTTCCTTCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTTAATACAGCCCTATCAATATCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCGACTTCACCAGATTCCACAGAGAATGCTCCTGAATCTATAGAACTCCATCTTAACTCGAACGGAAGTTTCATCAAAGAGTTCCGTAGTCGAATTCCAGCGATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTTGAACATGACTGCTCAGTCTGTCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCGCTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACTGCTTCCTGCTTCTAG 453 46.36 MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTSPDSTENAPESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4307429 4309433 - Sed0014030.1 Sed01g0593 699897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0593 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 142 IPR013083 -
Sed01g0593 150 PANTHER - 1 146 IPR044249 -
Sed01g0593 150 SUPERFAMILY RING/U-box 83 143 - -
Sed01g0593 150 Pfam Ring finger domain 94 137 IPR001841 -
Sed01g0593 150 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Sed01g0593 150 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0593 Sed-Chr1:4307429 Sed09g0036 Sed-Chr9:317372 8.80E-13 dispersed
Sed13g1388 Sed-Chr13:19328024 Sed01g0593 Sed-Chr1:4307429 7.70E-06 transposed
Sed01g0593 Sed-Chr1:4307429 Sed04g3747 Sed-Chr4:46195646 3.70E-51 wgd
Sed01g0593 Sed-Chr1:4307429 Sed05g3047 Sed-Chr5:40855263 3.80E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0593 K16285 - csv:101216645 293.508