Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0593 | ATGGGTATCTCCAGCCTTCCTTCTCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTTAATACAGCCCTATCAATATCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCGACTTCACCAGATTCCACAGAGAATGCTCCTGAATCTATAGAACTCCATCTTAACTCGAACGGAAGTTTCATCAAAGAGTTCCGTAGTCGAATTCCAGCGATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTTGAACATGACTGCTCAGTCTGTCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCGCTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACTGCTTCCTGCTTCTAG | 453 | 46.36 | MGISSLPSPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTSPDSTENAPESIELHLNSNGSFIKEFRSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCF | 150 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4307429 | 4309433 | - | Sed0014030.1 | Sed01g0593 | 699897 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0593 | 150 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 142 | IPR013083 | - | |
Sed01g0593 | 150 | PANTHER | - | 1 | 146 | IPR044249 | - | |
Sed01g0593 | 150 | SUPERFAMILY | RING/U-box | 83 | 143 | - | - | |
Sed01g0593 | 150 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
Sed01g0593 | 150 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 137 | IPR001841 | - | |
Sed01g0593 | 150 | SMART | ring_2 | 95 | 136 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0593 | Sed-Chr1:4307429 | Sed09g0036 | Sed-Chr9:317372 | 8.80E-13 | dispersed | |
Sed13g1388 | Sed-Chr13:19328024 | Sed01g0593 | Sed-Chr1:4307429 | 7.70E-06 | transposed | |
Sed01g0593 | Sed-Chr1:4307429 | Sed04g3747 | Sed-Chr4:46195646 | 3.70E-51 | wgd | |
Sed01g0593 | Sed-Chr1:4307429 | Sed05g3047 | Sed-Chr5:40855263 | 3.80E-72 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0593 | K16285 | - | csv:101216645 | 293.508 |