Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0596 | ATGGGTGTCACGTGTGATTTTTGTGGGAATCAAAGGTCGATGGTTTTCTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGCGATCGTAATGTGCACTCAGCTAATACCTTGTCGAAGCGCCATATGAGAATGCTGTTGTGTGAACGATGCCATTTGGAACCTGCCTCGGTAAGATGTATAGAAGAGAGGGTTTCTCTGTGCCAAAATTGTGACTGGACAGGTCATGACACATCTACAACATCATCACACAAGAGGCAAGCCATCAGTTATTACTCTGGTTGTCCCTCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGCTCCAACCTCAGTGAATGATGCTTGTGAGAATGAGATGGGTTTGATGAGCATTGCTGAGACTGACTCAAGGGGTGTTTGGAGCATCTCGGAGAATGCTGTTCAAAGAATGCCCGGATCAACTGAAGCCAGAGATGTTTGCAACAGGGAAAAGTCAAATGTTTTGGTTGGAACATCTTCACTCACTGATCTTGGCTCTAGGCCTCACACTTCAGATCAACCAGTTGAATTGTCTAACCTTGCTCTCCCCAAGTTTTGCTGTCCTGGAACAAAACTTTCTGGATTCTGTGGTGAGGATGATGGCATCTACAAGGAATTTGATATGGATGAAATGGATTTGAGTCTTGAAAATTATGAGGAGCTATTTGGTACAAACCTGAATCATTCTGAAGATCTTTTCGAGAATGGTGGATTCGATAGCCTTTTTGAGGCCAAAGGCCTATCTTTTGAAGATTCAGTTTGCCACAAAACAGCTGCTGCAGAGGGGTCTTCGGTCGGAGTGGTCAAACCAGTGCAGCCAGCCTGCAGTAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACCGAACCAATTCTCTGTTTTAATTCAAGGCAAGCACATTCAGGTGTGTCGTTTTCTGGCCTTACGGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGTCTCTTCAATGCCTCTAATGGGAGAGCCTCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTTCTGATCGTAACAATGCCGTTCTGCGTTATAAGGAAAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGGTACGCCACTCGCAAGGCGAGAGCCGATGTCAGAAAGCGTGTGAAAGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCGTTGAACCAGACTCGCACTCGTAGCTGCTGGGAAGGTTCGACATCATCCAAAGACGAAAGTTTAAATCGAAAAAAGCTGGTGCGAAAGGTTCCCGGGCAGATCGAAAAGGGTGTATAG | 1344 | 46.28 | MGVTCDFCGNQRSMVFCRSDAACLCLSCDRNVHSANTLSKRHMRMLLCERCHLEPASVRCIEERVSLCQNCDWTGHDTSTTSSHKRQAISYYSGCPSAAELSSIWSFVLDAPTSVNDACENEMGLMSIAETDSRGVWSISENAVQRMPGSTEARDVCNREKSNVLVGTSSLTDLGSRPHTSDQPVELSNLALPKFCCPGTKLSGFCGEDDGIYKEFDMDEMDLSLENYEELFGTNLNHSEDLFENGGFDSLFEAKGLSFEDSVCHKTAAAEGSSVGVVKPVQPACSNGASADSVMSTKTEPILCFNSRQAHSGVSFSGLTGESSAGDYQDCGVSSMPLMGEPPPWCVPGTESSFPSSDRNNAVLRYKEKKKTRKFEKTVRYATRKARADVRKRVKGRFVKAGEAYDYDPLNQTRTRSCWEGSTSSKDESLNRKKLVRKVPGQIEKGV | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4319201 | 4324173 | - | Sed0003785.3 | Sed01g0596 | 699900 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0596 | 447 | SMART | bboxneu5 | 48 | 89 | IPR000315 | GO:0008270(InterPro) | |
Sed01g0596 | 447 | SMART | bboxneu5 | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Sed01g0596 | 447 | Pfam | ANCHR-like B-box zinc-binding domain | 47 | 85 | - | - | |
Sed01g0596 | 447 | MobiDBLite | consensus disorder prediction | 417 | 447 | - | - | |
Sed01g0596 | 447 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Sed01g0596 | 447 | ProSiteProfiles | CCT domain profile. | 359 | 401 | IPR010402 | GO:0005515(InterPro) | |
Sed01g0596 | 447 | ProSiteProfiles | Zinc finger B-box type profile. | 43 | 89 | IPR000315 | GO:0008270(InterPro) | |
Sed01g0596 | 447 | MobiDBLite | consensus disorder prediction | 426 | 447 | - | - | |
Sed01g0596 | 447 | CDD | Bbox1_BBX-like | 47 | 89 | IPR049808 | - | |
Sed01g0596 | 447 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Sed01g0596 | 447 | Pfam | CCT motif | 359 | 401 | IPR010402 | GO:0005515(InterPro) | |
Sed01g0596 | 447 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 4 | 406 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0596 | Sed-Chr1:4319201 | Sed01g0601 | Sed-Chr1:4319201 | 1.30E-221 | dispersed | |
Sed01g0595 | Sed-Chr1:4319201 | Sed01g0596 | Sed-Chr1:4319201 | 2.20E-237 | tandem | |
Sed01g0596 | Sed-Chr1:4319201 | Sed01g0597 | Sed-Chr1:4319201 | 8.00E-195 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37130 | PF06203 | CCT | 2.20E-16 | CL0281 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0596 | - | - | - | 0.0 |