Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0600 ATGCTGTTCAAAGAATGCCCGGATCAACTGAAGCCAGAGATGTTTGCAACAGGGAAAAGTCAAATGTTTTGGTTGGAACATCTTCACTCACTGATCTTGGCTCTAGGCCTCACACTTCAGATCAACCAGTTGAATTGTCTAACCTTGCTCTCCCCAAGATTTCCCAATTTCTGCTTATTGGTTCTTGTCAAGGATCTTTTGAAGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACAAAACTTTCTGGATTCTGTGGTGAGGATGATGGCATCTACAAGGAATTTGATATGGATGAAATGGATTTGAGTCTTGAAAATTATGAGGAGCTATTTGGTACAAACCTGAATCATTCTGAAGATCTTTTCGAGAATGGTGGATTCGATAGCCTTTTTGAGGCCAAAGGCCTATCTTTTGAAGATTCAGTTTGCCACAAAACAGCTGCTGCAGAGGGGTCTTCGGTCGGAGTGGTCAAACCAGTGCAGCCAGCCTGCAGTAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACCGAACCAATTCTCTGTTTTAATTCAAGGCAAGCACATTCAGGTGTGTCGTTTTCTGGCCTTACGGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGTCTCTTCAATGCCTCTAATGGGAGAGCCTCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTTCTGATCGTAACAATGCCGTTCTGCGTTATAAGGAAAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGGTACGCCACTCGCAAGGCGAGAGCCGATGTCAGAAAGCGTGTGAAAGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCGTTGAACCAGACTCGCACTCGTAGCTGCTGGGTACAATTTTTTTTAACTATGCTTTACAAAAAGGAATGA 939 44.83 MLFKECPDQLKPEMFATGKSQMFWLEHLHSLILALGLTLQINQLNCLTLLSPRFPNFCLLVLVKDLLKHHIFGMQFCCPGTKLSGFCGEDDGIYKEFDMDEMDLSLENYEELFGTNLNHSEDLFENGGFDSLFEAKGLSFEDSVCHKTAAAEGSSVGVVKPVQPACSNGASADSVMSTKTEPILCFNSRQAHSGVSFSGLTGESSAGDYQDCGVSSMPLMGEPPPWCVPGTESSFPSSDRNNAVLRYKEKKKTRKFEKTVRYATRKARADVRKRVKGRFVKAGEAYDYDPLNQTRTRSCWVQFFLTMLYKKE 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4319201 4324173 - Sed0003785.7 Sed01g0600 699904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0600 312 ProSiteProfiles CCT domain profile. 240 282 IPR010402 GO:0005515(InterPro)
Sed01g0600 312 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 91 287 - -
Sed01g0600 312 Pfam CCT motif 240 282 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0598 Sed-Chr1:4319201 Sed01g0600 Sed-Chr1:4319201 6.00E-181 dispersed
Sed01g0600 Sed-Chr1:4319201 Sed01g0602 Sed-Chr1:4319201 3.60E-101 dispersed
Sed01g0599 Sed-Chr1:4319201 Sed01g0600 Sed-Chr1:4319201 7.40E-101 tandem
Sed01g0600 Sed-Chr1:4319201 Sed01g0601 Sed-Chr1:4319201 3.80E-135 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37132 PF06203 CCT 1.30E-16 CL0281 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0600 - - - 0.0