Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0601 ATGGGTGTCACGTGTGATTTTTGTGGGAATCAAAGGTCGATGGTTTTCTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGCGATCGTAATGTGCACTCAGCTAATACCTTGTCGAAGCGCCATATGAGAATGCTGTTGTGTGAACGATGCCATTTGGAACCTGCCTCGGTAAGATGTATAGAAGAGAGGGTTTCTCTGTGCCAAAATTGTGACTGGACAGGTCATGACACATCTACAACATCATCACACAAGAGGCAAGCCATCAGTTATTACTCTGGTTGTCCCTCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGCTCCAACCTCAGTGAATGATGCTTGTGAGAATGAGATGGGTTTGATGAGCATTGCTGAGACTGACTCAAGGGGTGTTTGGAGCATCTCGGAGAATGCTGTTCAAAGAATGCCCGGATCAACTGAAGCCAGAGATGTTTGCAACAGGGAAAAGTCAAATGTTTTGGTTGGAACATCTTCACTCACTGATCTTGGCTCTAGGCCTCACACTTCAGATCAACCAGTTGAATTGTCTAACCTTGCTCTCCCCAAGTTTTGCTGTCCTGGAACAAAACTTTCTGGATTCTGTGGTGAGGATGATGGCATCTACAAGGAATTTGATATGGATGAAATGGATTTGAGTCTTGAAAATTATGAGGAGCTATTTGGTACAAACCTGAATCATTCTGAAGATCTTTTCGAGAATGGTGGATTCGATAGCCTTTTTGAGGCCAAAGGCCTATCTTTTGAAGATTCAGTTTGCCACAAAACAGCTGCTGCAGAGGGGTCTTCGGTCGGAGTGGTCAAACCAGTGCAGCCAGCCTGCAGTAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACCGAACCAATTCTCTGTTTTAATTCAAGGCAAGCACATTCAGGTGTGTCGTTTTCTGGCCTTACGGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGTCTCTTCAATGCCTCTAATGGGAGAGCCTCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTTCTGATCGTAACAATGCCGTTCTGCGTTATAAGGAAAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGGTACGCCACTCGCAAGGCGAGAGCCGATGTCAGAAAGCGTGTGAAAGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCGTTGAACCAGACTCGCACTCGTAGCTGCTGGGTACAATTTTTTTTAACTATGCTTTACAAAAAGGAATGA 1296 45.68 MGVTCDFCGNQRSMVFCRSDAACLCLSCDRNVHSANTLSKRHMRMLLCERCHLEPASVRCIEERVSLCQNCDWTGHDTSTTSSHKRQAISYYSGCPSAAELSSIWSFVLDAPTSVNDACENEMGLMSIAETDSRGVWSISENAVQRMPGSTEARDVCNREKSNVLVGTSSLTDLGSRPHTSDQPVELSNLALPKFCCPGTKLSGFCGEDDGIYKEFDMDEMDLSLENYEELFGTNLNHSEDLFENGGFDSLFEAKGLSFEDSVCHKTAAAEGSSVGVVKPVQPACSNGASADSVMSTKTEPILCFNSRQAHSGVSFSGLTGESSAGDYQDCGVSSMPLMGEPPPWCVPGTESSFPSSDRNNAVLRYKEKKKTRKFEKTVRYATRKARADVRKRVKGRFVKAGEAYDYDPLNQTRTRSCWVQFFLTMLYKKE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4319201 4324373 - Sed0003785.8 Sed01g0601 699905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0601 431 SMART bboxneu5 48 89 IPR000315 GO:0008270(InterPro)
Sed01g0601 431 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Sed01g0601 431 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 406 - -
Sed01g0601 431 Pfam ANCHR-like B-box zinc-binding domain 47 85 - -
Sed01g0601 431 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed01g0601 431 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270(InterPro)
Sed01g0601 431 ProSiteProfiles CCT domain profile. 359 401 IPR010402 GO:0005515(InterPro)
Sed01g0601 431 Pfam CCT motif 359 401 IPR010402 GO:0005515(InterPro)
Sed01g0601 431 CDD Bbox1_BBX-like 47 89 IPR049808 -
Sed01g0601 431 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0594 Sed-Chr1:4319201 Sed01g0601 Sed-Chr1:4319201 8.20E-229 dispersed
Sed01g0595 Sed-Chr1:4319201 Sed01g0601 Sed-Chr1:4319201 1.30E-221 dispersed
Sed01g0596 Sed-Chr1:4319201 Sed01g0601 Sed-Chr1:4319201 1.30E-221 dispersed
Sed01g0599 Sed-Chr1:4319201 Sed01g0601 Sed-Chr1:4319201 3.90E-195 dispersed
Sed01g0601 Sed-Chr1:4319201 Sed01g0603 Sed-Chr1:4319201 7.70E-195 dispersed
Sed01g0600 Sed-Chr1:4319201 Sed01g0601 Sed-Chr1:4319201 3.80E-135 tandem
Sed01g0601 Sed-Chr1:4319201 Sed01g0602 Sed-Chr1:4319201 7.70E-195 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37133 PF06203 CCT 2.10E-16 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0601 - - - 0.0