Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0602 ATGGGTGTCACGTGTGATTTTTGTGGGAATCAAAGGTCGATGGTTTTCTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGCGATCGTAATGTGCACTCAGCTAATACCTTGTCGAAGCGCCATATGAGAATGCTGTTGTGTGAACGATGCCATTTGGAACCTGCCTCGGTAAGATGTATAGAAGAGAGGGTTTCTCTGTGCCAAAATTGTGACTGGACAGGTCATGACACATCTACAACATCATCACACAAGAGGCAAGCCATCAGTTATTACTCTGGTTGTCCCTCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGCTCCAACCTCAGTGAATGATGCTTGTGAGAATGAGATGGGTTTGATGAGCATTGCTGAGACTGACTCAAGGGGTGTTTGGAGCATCTCGGAGAATGCTGTTCAAAGAATGCCCGGATCAACTGAAGCCAGAGATGTTTGCAACAGGGAAAAGTCAAATGTTTTGGTTGGAACATCTTCACTCACTGATCTTGGCTCTAGGCCTCACACTTCAGATCAACCAGTTGAATTGTCTAACCTTGCTCTCCCCAAGTTTTGCTGTCCTGGAACAAAACTTTCTGGATTCTGTGGTGAGGATGATGGCATCTACAAGGAATTTGATATGGATGAAATGGATTTGAGTCTTGAAAATTATGAGGAGCTATTTGGTACAAACCTGAATCATTCTGAAGATCTTTTCGAGAATGGTGGATTCGATAGCCTTTTTGAGGCCAAAGGCCTATCTTTTGAAGATTCAGTTTGCCACAAAACAGCTGCTGCAGAGGGGTCTTCGGTCGGAGTGGTCAAACCAGTGCAGCCAGCCTGCAGTAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACCGAACCAATTCTCTGTTTTAATTCAAGGCAAGCACATTCAGGTGTGTCGTTTTCTGGCCTTACGGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGTCTCTTCAATGCCTCTAATGGGAGAGCCTCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTTCTGATCGTAACAATGCCGTTCTGCGTTATAAGGAAAAAAAGAAGACACGCAAGTAA 1125 45.33 MGVTCDFCGNQRSMVFCRSDAACLCLSCDRNVHSANTLSKRHMRMLLCERCHLEPASVRCIEERVSLCQNCDWTGHDTSTTSSHKRQAISYYSGCPSAAELSSIWSFVLDAPTSVNDACENEMGLMSIAETDSRGVWSISENAVQRMPGSTEARDVCNREKSNVLVGTSSLTDLGSRPHTSDQPVELSNLALPKFCCPGTKLSGFCGEDDGIYKEFDMDEMDLSLENYEELFGTNLNHSEDLFENGGFDSLFEAKGLSFEDSVCHKTAAAEGSSVGVVKPVQPACSNGASADSVMSTKTEPILCFNSRQAHSGVSFSGLTGESSAGDYQDCGVSSMPLMGEPPPWCVPGTESSFPSSDRNNAVLRYKEKKKTRK 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4319201 4324173 - Sed0003785.9 Sed01g0602 699906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0602 374 SMART bboxneu5 48 89 IPR000315 GO:0008270(InterPro)
Sed01g0602 374 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Sed01g0602 374 Pfam ANCHR-like B-box zinc-binding domain 47 85 - -
Sed01g0602 374 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed01g0602 374 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270(InterPro)
Sed01g0602 374 CDD Bbox1_BBX-like 47 89 IPR049808 -
Sed01g0602 374 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed01g0602 374 MobiDBLite consensus disorder prediction 347 374 - -
Sed01g0602 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0600 Sed-Chr1:4319201 Sed01g0602 Sed-Chr1:4319201 3.60E-101 dispersed
Sed01g0602 Sed-Chr1:4319201 Sed05g3044 Sed-Chr5:40848055 2.10E-132 dispersed
Sed01g0601 Sed-Chr1:4319201 Sed01g0602 Sed-Chr1:4319201 7.70E-195 tandem
Sed01g0602 Sed-Chr1:4319201 Sed01g0603 Sed-Chr1:4319201 3.90E-195 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0602 - - - 0.0