Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0605 ATGATGGATAGGGTATTTCACAGCATTAAGACTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTATTGGGCCTTTAGCAATATTAGTCAGCAGTTTATCTGGTCATCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCTACTGAACAACTGGCATGCTTTACTGGAGCCACAGTTGGTGGTCTTCTGAATGCTACTTTTGGAAATGCTACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGGGTTGTTCAACAGTCGTTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGCATTGTGGTTTCCAAGAGGGAGCAGGTCTTCAGTAAGGAATCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTGATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACGCATACAGAGTTGCACTCTGGAAAGTCAGAATTGGCTCTTTCAAGATTTAGTAGCTGCATTATGTTGGTGGCATATGCTGCCTATCTGGTTTTTCAGTTGAGAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGCGGATAATGAAGGGAATTCTGATGATGAAGAAGCTCCCGAGATTTCTATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATTTGGATTTCTGTCCTCTCAGAATACTTGGTTAATGCAATAGAGGGGGCATCGGTCGCCATGAACATACCTGTAGCATTCATTAGCGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCCTTGGGAGTTGCTATAGGATCTTCTACACAAATATCTATGTTTGGGATTCCTTTTTGTGTCGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTATTCATCACGGTTATTGTTGTCGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGGCTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCTTCAATTGAAGATAAGACTCGAAAATCTGGTAAATGA 1164 42.18 MMDRVFHSIKTVVFSAKINCLMPIGPLAILVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACFTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKESATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSCIMLVAYAAYLVFQLRSDKNLYLPVDEADNEGNSDDEEAPEISMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASIEDKTRKSGK 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4335970 4342559 + Sed0006397.1 Sed01g0605 699909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0605 387 FunFam Vacuolar cation/proton exchanger 69 208 - -
Sed01g0605 387 Pfam Sodium/calcium exchanger protein 227 369 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g0605 387 Pfam Sodium/calcium exchanger protein 39 195 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g0605 387 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 375 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed01g0605 387 Gene3D - 212 371 IPR044880 -
Sed01g0605 387 Gene3D - 67 211 IPR044880 -
Sed01g0605 387 FunFam Vacuolar cation/proton exchanger 215 371 - -
Sed01g0605 387 NCBIfam calcium/proton exchanger 24 370 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0605 Sed-Chr1:4335970 Sed08g2887 Sed-Chr8:39978048 5.20E-158 dispersed
Sed01g0605 Sed-Chr1:4335970 Sed01g0606 Sed-Chr1:4335970 5.30E-211 tandem
Sed03g2497 Sed-Chr3:30291415 Sed01g0605 Sed-Chr1:4335970 4.20E-95 transposed
Sed01g0605 Sed-Chr1:4335970 Sed05g3038 Sed-Chr5:40792720 1.10E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0605 K07300 - csv:101215915 696.812