Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0605 | ATGATGGATAGGGTATTTCACAGCATTAAGACTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTATTGGGCCTTTAGCAATATTAGTCAGCAGTTTATCTGGTCATCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCTACTGAACAACTGGCATGCTTTACTGGAGCCACAGTTGGTGGTCTTCTGAATGCTACTTTTGGAAATGCTACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGGGTTGTTCAACAGTCGTTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGCATTGTGGTTTCCAAGAGGGAGCAGGTCTTCAGTAAGGAATCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTGATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACGCATACAGAGTTGCACTCTGGAAAGTCAGAATTGGCTCTTTCAAGATTTAGTAGCTGCATTATGTTGGTGGCATATGCTGCCTATCTGGTTTTTCAGTTGAGAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGCGGATAATGAAGGGAATTCTGATGATGAAGAAGCTCCCGAGATTTCTATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATTTGGATTTCTGTCCTCTCAGAATACTTGGTTAATGCAATAGAGGGGGCATCGGTCGCCATGAACATACCTGTAGCATTCATTAGCGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCCTTGGGAGTTGCTATAGGATCTTCTACACAAATATCTATGTTTGGGATTCCTTTTTGTGTCGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTATTCATCACGGTTATTGTTGTCGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGGCTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCTTCAATTGAAGATAAGACTCGAAAATCTGGTAAATGA | 1164 | 42.18 | MMDRVFHSIKTVVFSAKINCLMPIGPLAILVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACFTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKESATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSCIMLVAYAAYLVFQLRSDKNLYLPVDEADNEGNSDDEEAPEISMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASIEDKTRKSGK | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4335970 | 4342559 | + | Sed0006397.1 | Sed01g0605 | 699909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0605 | 387 | FunFam | Vacuolar cation/proton exchanger | 69 | 208 | - | - | |
Sed01g0605 | 387 | Pfam | Sodium/calcium exchanger protein | 227 | 369 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g0605 | 387 | Pfam | Sodium/calcium exchanger protein | 39 | 195 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g0605 | 387 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 3 | 375 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Sed01g0605 | 387 | Gene3D | - | 212 | 371 | IPR044880 | - | |
Sed01g0605 | 387 | Gene3D | - | 67 | 211 | IPR044880 | - | |
Sed01g0605 | 387 | FunFam | Vacuolar cation/proton exchanger | 215 | 371 | - | - | |
Sed01g0605 | 387 | NCBIfam | calcium/proton exchanger | 24 | 370 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0605 | Sed-Chr1:4335970 | Sed08g2887 | Sed-Chr8:39978048 | 5.20E-158 | dispersed | |
Sed01g0605 | Sed-Chr1:4335970 | Sed01g0606 | Sed-Chr1:4335970 | 5.30E-211 | tandem | |
Sed03g2497 | Sed-Chr3:30291415 | Sed01g0605 | Sed-Chr1:4335970 | 4.20E-95 | transposed | |
Sed01g0605 | Sed-Chr1:4335970 | Sed05g3038 | Sed-Chr5:40792720 | 1.10E-192 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0605 | K07300 | - | csv:101215915 | 696.812 |