Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0606 ATGGGACCATTAGGTGAGAAAACCGTATTGGAATTTGAAGACGAGAGCCTTGTTAGTCCTGTATCATTAAATAGGAATAATTTTTCTATTGAGGGGTCTCCTTCATTTTCTGGTGGTTCGCAGAAATTCGGTTGCGGTAACATGATGGATAGGGTATTTCACAGCATTAAGACTGTCGTCTTCTCCGCTAAAATCAACTGTCTCATGCCTATTGGGCCTTTAGCAATATTAGTCAGCAGTTTATCTGGTCATCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCTACTGAACAACTGGCATGCTTTACTGGAGCCACAGTTGGTGGTCTTCTGAATGCTACTTTTGGAAATGCTACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGGGTTGTTCAACAGTCGTTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTGCTTGGATGTGCCTTCTTTGCTGGTGGCATTGTGGTTTCCAAGAGGGAGCAGGTCTTCAGTAAGGAATCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTGATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACGCATACAGAGTTGCACTCTGGAAAGTCAGAATTGGCTCTTTCAAGATTTAGTAGCTGCATTATGTTGGTGGCATATGCTGCCTATCTGGTTTTTCAGTTGAGAAGCGACAAGAACTTATATCTCCCGGTTGATGAGGCGGATAATGAAGGGAATTCTGATGATGAAGAAGCTCCCGAGATTTCTATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATTTGGATTTCTGTCCTCTCAGAATACTTGGTTAATGCAATAGAGGGGGCATCGGTCGCCATGAACATACCTGTAGCATTCATTAGCGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCCTTGGGAGTTGCTATAGGATCTTCTACACAAATATCTATGTTTGGGATTCCTTTTTGTGTCGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTATTCATCACGGTTATTGTTGTCGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGGCTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCTTCAATTGAAGATAAGACTCGAAAATCTGGTAAATGA 1305 41.99 MGPLGEKTVLEFEDESLVSPVSLNRNNFSIEGSPSFSGGSQKFGCGNMMDRVFHSIKTVVFSAKINCLMPIGPLAILVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACFTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKESATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSCIMLVAYAAYLVFQLRSDKNLYLPVDEADNEGNSDDEEAPEISMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASIEDKTRKSGK 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4335970 4342559 + Sed0006397.2 Sed01g0606 699910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0606 434 Pfam Sodium/calcium exchanger protein 274 416 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g0606 434 Pfam Sodium/calcium exchanger protein 86 242 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g0606 434 NCBIfam calcium/proton exchanger 71 417 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Sed01g0606 434 FunFam Vacuolar cation/proton exchanger 116 255 - -
Sed01g0606 434 Gene3D - 259 418 IPR044880 -
Sed01g0606 434 Gene3D - 114 258 IPR044880 -
Sed01g0606 434 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 40 422 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed01g0606 434 FunFam Vacuolar cation/proton exchanger 262 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0606 Sed-Chr1:4335970 Sed05g3038 Sed-Chr5:40792720 3.10E-212 dispersed
Sed01g0605 Sed-Chr1:4335970 Sed01g0606 Sed-Chr1:4335970 5.30E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0606 K07300 - csv:101215915 763.837