Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0608 ATGTCGGGCCGGGCTGATGTGGGAAGGGATCGATATCGGAAGGATTATTCGTCGAGATTTGACGAGAAGCCGCAATCTGGGCATAGTAATAGTAGCAATCCTCCGTCGAGGCATCTCTGGGTTGGAAATTTGTCTCATGTTCTTGTGGAGCGTGATATCAGCCGCTGTTTTTCACAGTTTGGAGAGCTTGACAGAATTGCTTTCCAGCCCAGTCGTAGTTATGCTTTCATCAATTTCAGAAGGGACGAAGATGCAATTGCGGCCATGAGAGAGCTTCAAGGTTTTTCTCTTGCAGGGAATCCCATTAGAATTGAGTTTGCCAAGGCGGAGAAGCCATCCGCATCATCACGTGATGAAGACTATTCTCAACATCGAGAGGAAAAATATTATGGAGAAAAGGGTTCGGGTTCCTTCTCACAGGGACGGCATGCTAGCCCTGTTAGAATTCATTCAGAAAAGTCCAAAATGAATGATAAAAATGCAGAGCCTAGTGAAGTGCTATGGATAGGATTTCCAGCTTTCTTAAAAGTAGATGAAATGTTGTTAAGGAAGGCCTTTTCACCATTTGGAGAAATTGATAAGATTACAGTGTTTCCAGGTCGGACATTTGCTTTTGTTCGTTTTCGGGGTCTCCAATCAGCTTGTAGGGCTAAAGAAACTCTACAGGGGAAACTGTTTGGAAACCCCCGGGTACATATTTGTTTTGCGAAAACTGAATCTGGATCATCAAACAGTGGAAGGAACTCAATGAATGCACCTCCTTCTCAAAGATCACCTCACCTTTTCTCGAACTTTGATTCTGGAGAATTCGATTCCCGTGGCTTTAATAGGAATACTAATTTATGGAGTAGTGGGAACAATGCATTTGAAATGAAGAGGTCTGGAGAATTCTCATCAAAATTAGGTCCATCCCAAGATAAGTATGAACATCATGGCAGTCCAACAAAAGAGAGAGGTTCTCATTTAAATAACTTTCATCAAAGATTTCCTCAACCTAGTCCATTTTATGAAGAACCATGGGACTTGCCAGAGGATACAAACTTATATCATGGGTCCAAGAAATTGAAAACTGGACCCTTTCCCCAGGATAAAGAGCTACCTGAGTATCCTATATCTGATTTGGAACAAGATAAACGTAATGTTCCAAAGTTATATCCTGATTTTCCCCATTCAGAGGCCTTTGATAATAATATGAAATCCGGGCCGCCTTTCGGGTATAAACAGAATCCTGATCGGCCTATGACAATGCCGGTCCCTTATGGAGAAAAGAGTGAACACTGGAGGGAACCTTATGATAACTTTCAGGGTCCTGATTCTTTGCCATTAAATGCTGTTGCAAGGAAAAGATTCTCTCCTGATCCGGAACAGCCGTCTATAAAAGATTGGAAATGGGAAGGAACTATTGCAAAGGGAGGATCACCTGTATGTCGTGCCCGCTGCTTTCCTGTTGGAAAGTTTATGGATATGCTGTTGCCAGAGTTCATAGACTGTACTGCAAGAACTGGTTTAGACATACTTTCAAAGCATTATTATGAAGCAACTAGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGTGATTCTGATATCATATTCTACAATGAATTCATGCACTATCTTGGCGAAAAGCAACGAGCAGCTGTTTCGAAGTTGGATGACAGAACCACCTTGTTTCTTGTACCACCATCTGAGTTCTCAGAACAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGTGTAGTTCTGAGGTTAGAGCGTCCTGGTACCAGTGCTGCAAGGCCTCCTCCTTATCAAAATGAAACAAAAGACTCAAACTTGTTAGCTTTACATAGTGAAACATCATATACAAAGTTACCGCCGCCTCCACCTGTTTTCGCCCCGGTACAATCTTTACCTGATCTCAGTAATTCAGGCATCAATAATACATCAATGCCTAGGAATGCTGCTACTTCTGCTTCACCTGCTTTATTTCATGGTTCAGCTCAATCTGTTGGAGGTTTTTCTGACACATATATTGAGAGCAGGCCTGAGTATCCAAACTCATCTTCTCACCATCTACAGAACTCAATGGTTGATATTAGAAATTATCAGTCACAAGCTTCCAACAATTCAATGGATCCTGTTATTCAGGAACGTCATTTTGTAATTCCAAGGGAAATTCAGCAAACAGGTTCCAGTAATTATACAGTTGGGAATGCTTTATCAACTCAACAAGAAATAAAACCGACAGCGTCTATGGCAGCAACGCTTTCCTCCCTACCGCCGGACCAACTGGCGCAATTAGCATCATCTCTACTTGGGTATCAAAGGCAGTTAGAGAGCACACCAAATGCAGCCATGCCTGAAGAATCGAGGCATCGAAACCTGGTCGACGAATCTGTTATGCCATTGGCAAGGCCCCAAAATGGTTCTTTCCAGACAAATCTGATGAACTCTGAGCCTCAGACATCGCATGTTGTTCAAGAAATTCCACAGATGCAGCATGTACAACAGCACCAAATGTGGAACGTGCCAGATGGGCACCATACTGCAAACCGAGAGCTTCAGGCAGGGGCTTTAGGCCATAACCAACAGGTTCAAAACTCCGATGTGCAAGGAGAAGCCGAGGCCGATCCCCAGAAACGCCTGCAGGCTACGCTTCAGCTAGCAGCTGTTCTTCTCCAGCAAATTCAACAAGGAAAAGGAAATTGA 2691 43.18 MSGRADVGRDRYRKDYSSRFDEKPQSGHSNSSNPPSRHLWVGNLSHVLVERDISRCFSQFGELDRIAFQPSRSYAFINFRRDEDAIAAMRELQGFSLAGNPIRIEFAKAEKPSASSRDEDYSQHREEKYYGEKGSGSFSQGRHASPVRIHSEKSKMNDKNAEPSEVLWIGFPAFLKVDEMLLRKAFSPFGEIDKITVFPGRTFAFVRFRGLQSACRAKETLQGKLFGNPRVHICFAKTESGSSNSGRNSMNAPPSQRSPHLFSNFDSGEFDSRGFNRNTNLWSSGNNAFEMKRSGEFSSKLGPSQDKYEHHGSPTKERGSHLNNFHQRFPQPSPFYEEPWDLPEDTNLYHGSKKLKTGPFPQDKELPEYPISDLEQDKRNVPKLYPDFPHSEAFDNNMKSGPPFGYKQNPDRPMTMPVPYGEKSEHWREPYDNFQGPDSLPLNAVARKRFSPDPEQPSIKDWKWEGTIAKGGSPVCRARCFPVGKFMDMLLPEFIDCTARTGLDILSKHYYEATSAWVVFFVPESDSDIIFYNEFMHYLGEKQRAAVSKLDDRTTLFLVPPSEFSEQVLKVPGKLSISGVVLRLERPGTSAARPPPYQNETKDSNLLALHSETSYTKLPPPPPVFAPVQSLPDLSNSGINNTSMPRNAATSASPALFHGSAQSVGGFSDTYIESRPEYPNSSSHHLQNSMVDIRNYQSQASNNSMDPVIQERHFVIPREIQQTGSSNYTVGNALSTQQEIKPTASMAATLSSLPPDQLAQLASSLLGYQRQLESTPNAAMPEESRHRNLVDESVMPLARPQNGSFQTNLMNSEPQTSHVVQEIPQMQHVQQHQMWNVPDGHHTANRELQAGALGHNQQVQNSDVQGEAEADPQKRLQATLQLAAVLLQQIQQGKGN 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4343620 4352400 + Sed0006734.2 Sed01g0608 699912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0608 896 MobiDBLite consensus disorder prediction 1 36 - -
Sed01g0608 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 109 IPR000504 GO:0003723(InterPro)
Sed01g0608 896 MobiDBLite consensus disorder prediction 238 263 - -
Sed01g0608 896 SUPERFAMILY RNA-binding domain, RBD 176 266 IPR035979 GO:0003676(InterPro)
Sed01g0608 896 MobiDBLite consensus disorder prediction 131 156 - -
Sed01g0608 896 SMART rrm1_1 38 105 IPR000504 GO:0003723(InterPro)
Sed01g0608 896 SMART rrm1_1 166 234 IPR000504 GO:0003723(InterPro)
Sed01g0608 896 CDD RRM_SF 176 233 - -
Sed01g0608 896 MobiDBLite consensus disorder prediction 391 412 - -
Sed01g0608 896 CDD SPOC_FPA-like 463 582 - -
Sed01g0608 896 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Sed01g0608 896 MobiDBLite consensus disorder prediction 1 22 - -
Sed01g0608 896 Pfam SPOC domain 455 576 IPR012921 -
Sed01g0608 896 MobiDBLite consensus disorder prediction 296 320 - -
Sed01g0608 896 CDD RRM_SF 39 105 - -
Sed01g0608 896 Gene3D - 150 258 IPR012677 -
Sed01g0608 896 Gene3D - 9 146 IPR012677 -
Sed01g0608 896 MobiDBLite consensus disorder prediction 303 320 - -
Sed01g0608 896 PANTHER RNA RECOGNITION MOTIF-CONTAINING 19 656 - -
Sed01g0608 896 Pfam RNA recognition motif 39 103 IPR000504 GO:0003723(InterPro)
Sed01g0608 896 Pfam RNA recognition motif 177 230 IPR000504 GO:0003723(InterPro)
Sed01g0608 896 SUPERFAMILY RNA-binding domain, RBD 24 117 IPR035979 GO:0003676(InterPro)
Sed01g0608 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0608 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0608 Sed-Chr1:4343620 Sed09g0405 Sed-Chr9:3877241 5.70E-67 dispersed
Sed01g0607 Sed-Chr1:4343620 Sed01g0608 Sed-Chr1:4343620 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008462 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 35