Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0615 ATGGCTTCCAGTTCGACGAAGGATGTCGCTGCTGATGAGAAGACAGCTTCGTTGGATAACAAAAGTACCATCAGTGAAACATCCAAAAGTGAAACATCCCCTGCAGAGCAGCAGCCTGATAAACCAAAAGCTCCTTCAGCTTCACCTCATGGAGGATTTCCTGCAAATCCTTTTGACTTTTCTGCAATGACTGGGTTGCTTAACGATCCTAGCATTCAAGAGTTAGCTTCTCAAATAGCAAAAGATCCTTCATTTAATCAGATGGCATCGGAACTTCAGAAGACTTTTCAAGGTGCTTCTGCTCAGCAGGGTATTCCTCAGTTTGATACACAACAATACTATTCTACCATGCAGCAGGTCATGCAGAATCCTCAATTTATGACAATGGCCGAGCGCCTTGGCAATGCACTAATGCAGGATCCATCCATGTCTAGCATGCTGGAAACTTTTGCAAATCCATCCAATAAAGAGCAGCTTGAGGAACGTATGGCACAAATCAAGGAAGATCCATCTTTGAAGCCTATTTTGGATGAAATAGAGACTGGTGGTCCAGCTGCCATGATGAGGTACTGGAACGACAAAGATGTCTTGAAAAAGTTGGGCGAAGCAATGGGTTTTGCAGTTTCTGGAGATGCAGCCAATGCTGAAAGTTCTGTTGTAGATGATTCAGAAGAAGTGGAAAATGAAGGTGAACCTATAGTTCATCAAACTGCTAGTGTTGGTGATGCCGAGGGCTTAAAAAAAGCACTAGCAGCCGGTGAGAATAAGGACGAAGAAGATTCGGAGGGAAGGACCGCACTACATTTTGCGTGTGGGTATGGTGAGGCGAAATGCGCTCAGATCCTTATTGAAGCTGGAGTTAAAGTGGATGCCCTGGATAAGAATAAGAACACTGCACTTCATTATGCAGCTGGTTATGGCAGGAAGGAGTGTGTTGCACTATTGCTCGAGAATGGCGCTGCAGTCACTCTCCAGAACTTGGATGGAAAGACCCCCATAGATGTTGCCAAGCTAAACAGCCAGCACGAGGTGCTGAAATTGCTGGAGAAGGACGTTTTCCTGTAA 1065 45.16 MASSSTKDVAADEKTASLDNKSTISETSKSETSPAEQQPDKPKAPSASPHGGFPANPFDFSAMTGLLNDPSIQELASQIAKDPSFNQMASELQKTFQGASAQQGIPQFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSSMLETFANPSNKEQLEERMAQIKEDPSLKPILDEIETGGPAAMMRYWNDKDVLKKLGEAMGFAVSGDAANAESSVVDDSEEVENEGEPIVHQTASVGDAEGLKKALAAGENKDEEDSEGRTALHFACGYGEAKCAQILIEAGVKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNLDGKTPIDVAKLNSQHEVLKLLEKDVFL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4374200 4382261 + Sed0002453.5 Sed01g0615 699919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0615 354 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 101 348 - GO:0030941(PANTHER)|GO:0031359(PANTHER)|GO:0045036(PANTHER)
Sed01g0615 354 MobiDBLite consensus disorder prediction 1 65 - -
Sed01g0615 354 Gene3D - 232 354 IPR036770 -
Sed01g0615 354 ProSiteProfiles Ankyrin repeat region circular profile. 295 326 - -
Sed01g0615 354 SMART ANK_2a 262 291 IPR002110 GO:0005515(InterPro)
Sed01g0615 354 SMART ANK_2a 295 324 IPR002110 GO:0005515(InterPro)
Sed01g0615 354 SMART ANK_2a 229 258 IPR002110 GO:0005515(InterPro)
Sed01g0615 354 MobiDBLite consensus disorder prediction 1 39 - -
Sed01g0615 354 ProSiteProfiles Ankyrin repeat region circular profile. 262 294 - -
Sed01g0615 354 Pfam STI1/HOP, DP domain 159 205 IPR041243 -
Sed01g0615 354 Pfam Ankyrin repeats (3 copies) 235 326 IPR002110 GO:0005515(InterPro)
Sed01g0615 354 SUPERFAMILY Ankyrin repeat 222 349 IPR036770 -
Sed01g0615 354 ProSiteProfiles Ankyrin repeat profile. 295 327 IPR002110 GO:0005515(InterPro)
Sed01g0615 354 FunFam Ankyrin repeat domain-containing protein 2 300 351 - -
Sed01g0615 354 FunFam Ankyrin repeat domain-containing protein 2 222 299 - -
Sed01g0615 354 ProSiteProfiles Ankyrin repeat profile. 262 294 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0615 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0613 Sed-Chr1:4374200 Sed01g0615 Sed-Chr1:4374200 4.50E-109 dispersed
Sed01g0615 Sed-Chr1:4374200 Sed05g3035 Sed-Chr5:40749613 1.30E-99 dispersed
Sed01g0614 Sed-Chr1:4374200 Sed01g0615 Sed-Chr1:4374200 5.10E-120 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57