Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0619 ATGGAGGATAAGCAAGGGATAAGCAGCAACAAGCCAACTGAAAAATGGATGGCATTTGAAAGAGAATCAAACACAACAAACACTCCTGGAAATGAAGCAAAAGAAGAAAGAAAAAGCTTGCAATCCTCTTCCAAAGAAGCAAACATAGCAGAAAGGGCTGCTGAATGGGGACTTGTGGTGGAGATAGATGTGGAAGAAGGCAGTTTCAAGGCCATTGTTGGAAGTTCATCAGGGGAGGTTGGGGGCAGAAAAAGGTCATCAGAGAAAATCAGTGAAGGAGTAAGAACTTCAAGCTTTAGCAATGAAAGGTCTGGAGTTTTTCCAAGGGCTTCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACTTTTGTTGTCTCTGATGCCACCAAACCAGATTGCCCCATTGTGTATGCCAGTAGTGGGTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAGGAACTGCCGTTTCCTTCAAGGACCAGAGACAGACCAGAAAGAAGTTGACAGAATTCGATATGCGGTGAAGAATGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTCACAGTCACCCCTATCAAGGATGACAATGACAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGAGAGAGCATTACGGCCGAACGGGTTGTCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAAAGGGTTCCATCACAGAGGTTGTTCAAACGGTGAAGAATCCTCGGTCTCATAATCGAGCTATGAGTCATGATATTAACATGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGACTATGTTCTTCCAAAGTCAGTTCAAGCTGCAAATTATACACCAGGTAGACAAACTCCAGACCTCAGAGACGAGGGCTTAGGCAAGAAACCTAGGTTATCAAGTCGAATTTCTTTAATGGGGTTCAAAGGTAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTGATGGCCCTTGAACCCGAAATTTTGATGACCAAAGAAATAGAACGAACTGATAGTTGGGACCGTGCTGAAAGAGGAAGGGATGCTCGCCAAGGAATTGACTTAGCTACAACTTTGGAGCGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGCCGGTTTCTTCAAGGACCTGAAACAGACCCAGATACTGTCTCAAGTATAAGGGATGCAATTCGAGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACGGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGCGATGAGACGGGAGAGCTTCAGTATTTTATCGGCGTACAACTAGATGGAAGTGATCATGAGGAACCGTTACAAAACCGCCTTTCTGAGTCAGCAGAGCAGCAGAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTCGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTATTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATCGGACTCCAACATCTTAAGCCAATTAAACCACTGGGTTCTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTCTATGCCTTGAAAGCAATGGAGAAATCAGCACTGTTGAATCGAAACAAGGTCCACAGAGTATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATATGCATCATTTGAGACTCCTACACACATTTGTTTGCTAACCGACTTTTGCTCTGGCGGGGAGTTGTTTGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGACTCTGCAAGGTTCTATGCCGCAGAGGTCATCATTGGCTTGGAGTATCTTCACTGTCTAGGAATCATTTATCGAGATCTGAAGCCCGAAAATATTCTTCTCCAGAAGGATGGGCATGTGACGCTTGCCGACTTTGACTTATCACTTATGACAGATTGCAAACCACAGATTGTGAAGTACCCTTTGCCTCACGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCGATCACACATTCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGTGAAGGACACAGCAGCTCTATCGATTGGTGGGCGCTCGGTATATTATTGTACGAGATGCTTTATGGCCGGACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCATGCACAAGGATCTCACCTTTCCTATCAGCATTCAGGTAAGTCTAGCAGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGACCCCGGTCGGCGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGGTCTGATGGTAAATTCTCAATTGAAAATGTATATAAAATTGGGATGAAAATTTAG 2685 43.31 MEDKQGISSNKPTEKWMAFERESNTTNTPGNEAKEERKSLQSSSKEANIAERAAEWGLVVEIDVEEGSFKAIVGSSSGEVGGRKRSSEKISEGVRTSSFSNERSGVFPRASQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDRIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNDNTIKFIGMQVEVSKYTEGINERALRPNGLSKSLIRYDARQKEKAKGSITEVVQTVKNPRSHNRAMSHDINMKKEELEKFNLDYVLPKSVQAANYTPGRQTPDLRDEGLGKKPRLSSRISLMGFKGKSLSSSRKLEVMALEPEILMTKEIERTDSWDRAERGRDARQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDPDTVSSIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSDHEEPLQNRLSESAEQQSAKLVKATAENVDEAVRELPDANSRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHLKPIKPLGSGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRVCIERQIIALLDHPFLPTLYASFETPTHICLLTDFCSGGELFALLDKQPMKMFKEDSARFYAAEVIIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLMTDCKPQIVKYPLPHGRRRSRSQPPPVFVAEPITHSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNIMHKDLTFPISIQVSLAARQLINALLQRDPGRRLGSSTGANEIKQHPFFQSINWPLIRSDGKFSIENVYKIGMKI 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4410541 4424908 + Sed0011305.1 Sed01g0619 699923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0619 894 Gene3D Phosphorylase Kinase; domain 1 581 664 - -
Sed01g0619 894 SUPERFAMILY PYP-like sensor domain (PAS domain) 131 223 IPR035965 -
Sed01g0619 894 FunFam Putative LOV domain-containing protein 124 280 - -
Sed01g0619 894 ProSiteProfiles PAC domain profile. 454 508 IPR000700 -
Sed01g0619 894 Gene3D PAS domain 124 293 - -
Sed01g0619 894 FunFam Putative LOV domain-containing protein 665 880 - -
Sed01g0619 894 Gene3D PAS domain 369 533 - -
Sed01g0619 894 ProSiteProfiles PAS repeat profile. 380 453 IPR000014 -
Sed01g0619 894 MobiDBLite consensus disorder prediction 1 46 - -
Sed01g0619 894 MobiDBLite consensus disorder prediction 75 97 - -
Sed01g0619 894 CDD PAS 395 495 IPR000014 -
Sed01g0619 894 NCBIfam PAS domain S-box protein 405 499 IPR000014 -
Sed01g0619 894 NCBIfam PAS domain S-box protein 136 226 IPR000014 -
Sed01g0619 894 Pfam PAS domain 403 495 IPR000014 -
Sed01g0619 894 Pfam PAS domain 131 227 IPR000014 -
Sed01g0619 894 ProSiteProfiles PAC domain profile. 184 238 IPR000700 -
Sed01g0619 894 PANTHER FLIPPASE KINASE 1-RELATED 509 878 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed01g0619 894 Pfam Protein kinase domain 584 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0619 894 SMART pas_2 382 451 IPR000014 -
Sed01g0619 894 SMART pas_2 112 181 IPR000014 -
Sed01g0619 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0619 894 SUPERFAMILY Protein kinase-like (PK-like) 558 877 IPR011009 -
Sed01g0619 894 ProSiteProfiles Protein kinase domain profile. 581 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0619 894 CDD PAS 137 226 IPR000014 -
Sed01g0619 894 Gene3D Transferase(Phosphotransferase) domain 1 665 877 - -
Sed01g0619 894 SMART pac_2 457 499 IPR001610 -
Sed01g0619 894 SMART pac_2 187 229 IPR001610 -
Sed01g0619 894 FunFam LOV domain-containing protein 369 533 - -
Sed01g0619 894 SUPERFAMILY PYP-like sensor domain (PAS domain) 396 495 IPR035965 -
Sed01g0619 894 ProSiteProfiles PAS repeat profile. 110 183 IPR000014 -
Sed01g0619 894 CDD STKc_phototropin_like 579 877 - -
Sed01g0619 894 SMART serkin_6 581 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0619 894 ProSitePatterns Protein kinases ATP-binding region signature. 587 610 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0619 Sed-Chr1:4410541 Sed05g2908 Sed-Chr5:40036313 1.80E-294 dispersed
Sed11g0551 Sed-Chr11:5687349 Sed01g0619 Sed-Chr1:4410541 2.00E-18 dispersed
Sed06g1563 Sed-Chr6:40429758 Sed01g0619 Sed-Chr1:4410541 4.10E-49 transposed
Sed01g0619 Sed-Chr1:4410541 Sed04g3758 Sed-Chr4:46261632 1.90E-267 wgd
Sed01g0619 Sed-Chr1:4410541 Sed05g3024 Sed-Chr5:40702391 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78553 PF00069 Pkinase 1.40E-61 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0619 K20715 - csv:101215355 1597.02