Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0619 | ATGGAGGATAAGCAAGGGATAAGCAGCAACAAGCCAACTGAAAAATGGATGGCATTTGAAAGAGAATCAAACACAACAAACACTCCTGGAAATGAAGCAAAAGAAGAAAGAAAAAGCTTGCAATCCTCTTCCAAAGAAGCAAACATAGCAGAAAGGGCTGCTGAATGGGGACTTGTGGTGGAGATAGATGTGGAAGAAGGCAGTTTCAAGGCCATTGTTGGAAGTTCATCAGGGGAGGTTGGGGGCAGAAAAAGGTCATCAGAGAAAATCAGTGAAGGAGTAAGAACTTCAAGCTTTAGCAATGAAAGGTCTGGAGTTTTTCCAAGGGCTTCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACTTTTGTTGTCTCTGATGCCACCAAACCAGATTGCCCCATTGTGTATGCCAGTAGTGGGTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAGGAACTGCCGTTTCCTTCAAGGACCAGAGACAGACCAGAAAGAAGTTGACAGAATTCGATATGCGGTGAAGAATGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTCACAGTCACCCCTATCAAGGATGACAATGACAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGAGAGAGCATTACGGCCGAACGGGTTGTCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAAAGGGTTCCATCACAGAGGTTGTTCAAACGGTGAAGAATCCTCGGTCTCATAATCGAGCTATGAGTCATGATATTAACATGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGACTATGTTCTTCCAAAGTCAGTTCAAGCTGCAAATTATACACCAGGTAGACAAACTCCAGACCTCAGAGACGAGGGCTTAGGCAAGAAACCTAGGTTATCAAGTCGAATTTCTTTAATGGGGTTCAAAGGTAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTGATGGCCCTTGAACCCGAAATTTTGATGACCAAAGAAATAGAACGAACTGATAGTTGGGACCGTGCTGAAAGAGGAAGGGATGCTCGCCAAGGAATTGACTTAGCTACAACTTTGGAGCGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGCCGGTTTCTTCAAGGACCTGAAACAGACCCAGATACTGTCTCAAGTATAAGGGATGCAATTCGAGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACGGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGCGATGAGACGGGAGAGCTTCAGTATTTTATCGGCGTACAACTAGATGGAAGTGATCATGAGGAACCGTTACAAAACCGCCTTTCTGAGTCAGCAGAGCAGCAGAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTCGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTATTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATCGGACTCCAACATCTTAAGCCAATTAAACCACTGGGTTCTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTCTATGCCTTGAAAGCAATGGAGAAATCAGCACTGTTGAATCGAAACAAGGTCCACAGAGTATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATATGCATCATTTGAGACTCCTACACACATTTGTTTGCTAACCGACTTTTGCTCTGGCGGGGAGTTGTTTGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGACTCTGCAAGGTTCTATGCCGCAGAGGTCATCATTGGCTTGGAGTATCTTCACTGTCTAGGAATCATTTATCGAGATCTGAAGCCCGAAAATATTCTTCTCCAGAAGGATGGGCATGTGACGCTTGCCGACTTTGACTTATCACTTATGACAGATTGCAAACCACAGATTGTGAAGTACCCTTTGCCTCACGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCGATCACACATTCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGTGAAGGACACAGCAGCTCTATCGATTGGTGGGCGCTCGGTATATTATTGTACGAGATGCTTTATGGCCGGACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCATGCACAAGGATCTCACCTTTCCTATCAGCATTCAGGTAAGTCTAGCAGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGACCCCGGTCGGCGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGGTCTGATGGTAAATTCTCAATTGAAAATGTATATAAAATTGGGATGAAAATTTAG | 2685 | 43.31 | MEDKQGISSNKPTEKWMAFERESNTTNTPGNEAKEERKSLQSSSKEANIAERAAEWGLVVEIDVEEGSFKAIVGSSSGEVGGRKRSSEKISEGVRTSSFSNERSGVFPRASQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDRIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNDNTIKFIGMQVEVSKYTEGINERALRPNGLSKSLIRYDARQKEKAKGSITEVVQTVKNPRSHNRAMSHDINMKKEELEKFNLDYVLPKSVQAANYTPGRQTPDLRDEGLGKKPRLSSRISLMGFKGKSLSSSRKLEVMALEPEILMTKEIERTDSWDRAERGRDARQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDPDTVSSIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSDHEEPLQNRLSESAEQQSAKLVKATAENVDEAVRELPDANSRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHLKPIKPLGSGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRVCIERQIIALLDHPFLPTLYASFETPTHICLLTDFCSGGELFALLDKQPMKMFKEDSARFYAAEVIIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLMTDCKPQIVKYPLPHGRRRSRSQPPPVFVAEPITHSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNIMHKDLTFPISIQVSLAARQLINALLQRDPGRRLGSSTGANEIKQHPFFQSINWPLIRSDGKFSIENVYKIGMKI | 894 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4410541 | 4424908 | + | Sed0011305.1 | Sed01g0619 | 699923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0619 | 894 | Gene3D | Phosphorylase Kinase; domain 1 | 581 | 664 | - | - | |
Sed01g0619 | 894 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 131 | 223 | IPR035965 | - | |
Sed01g0619 | 894 | FunFam | Putative LOV domain-containing protein | 124 | 280 | - | - | |
Sed01g0619 | 894 | ProSiteProfiles | PAC domain profile. | 454 | 508 | IPR000700 | - | |
Sed01g0619 | 894 | Gene3D | PAS domain | 124 | 293 | - | - | |
Sed01g0619 | 894 | FunFam | Putative LOV domain-containing protein | 665 | 880 | - | - | |
Sed01g0619 | 894 | Gene3D | PAS domain | 369 | 533 | - | - | |
Sed01g0619 | 894 | ProSiteProfiles | PAS repeat profile. | 380 | 453 | IPR000014 | - | |
Sed01g0619 | 894 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Sed01g0619 | 894 | MobiDBLite | consensus disorder prediction | 75 | 97 | - | - | |
Sed01g0619 | 894 | CDD | PAS | 395 | 495 | IPR000014 | - | |
Sed01g0619 | 894 | NCBIfam | PAS domain S-box protein | 405 | 499 | IPR000014 | - | |
Sed01g0619 | 894 | NCBIfam | PAS domain S-box protein | 136 | 226 | IPR000014 | - | |
Sed01g0619 | 894 | Pfam | PAS domain | 403 | 495 | IPR000014 | - | |
Sed01g0619 | 894 | Pfam | PAS domain | 131 | 227 | IPR000014 | - | |
Sed01g0619 | 894 | ProSiteProfiles | PAC domain profile. | 184 | 238 | IPR000700 | - | |
Sed01g0619 | 894 | PANTHER | FLIPPASE KINASE 1-RELATED | 509 | 878 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed01g0619 | 894 | Pfam | Protein kinase domain | 584 | 868 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0619 | 894 | SMART | pas_2 | 382 | 451 | IPR000014 | - | |
Sed01g0619 | 894 | SMART | pas_2 | 112 | 181 | IPR000014 | - | |
Sed01g0619 | 894 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 702 | 714 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0619 | 894 | SUPERFAMILY | Protein kinase-like (PK-like) | 558 | 877 | IPR011009 | - | |
Sed01g0619 | 894 | ProSiteProfiles | Protein kinase domain profile. | 581 | 868 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0619 | 894 | CDD | PAS | 137 | 226 | IPR000014 | - | |
Sed01g0619 | 894 | Gene3D | Transferase(Phosphotransferase) domain 1 | 665 | 877 | - | - | |
Sed01g0619 | 894 | SMART | pac_2 | 457 | 499 | IPR001610 | - | |
Sed01g0619 | 894 | SMART | pac_2 | 187 | 229 | IPR001610 | - | |
Sed01g0619 | 894 | FunFam | LOV domain-containing protein | 369 | 533 | - | - | |
Sed01g0619 | 894 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 396 | 495 | IPR035965 | - | |
Sed01g0619 | 894 | ProSiteProfiles | PAS repeat profile. | 110 | 183 | IPR000014 | - | |
Sed01g0619 | 894 | CDD | STKc_phototropin_like | 579 | 877 | - | - | |
Sed01g0619 | 894 | SMART | serkin_6 | 581 | 868 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0619 | 894 | ProSitePatterns | Protein kinases ATP-binding region signature. | 587 | 610 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0619 | Sed-Chr1:4410541 | Sed05g2908 | Sed-Chr5:40036313 | 1.80E-294 | dispersed | |
Sed11g0551 | Sed-Chr11:5687349 | Sed01g0619 | Sed-Chr1:4410541 | 2.00E-18 | dispersed | |
Sed06g1563 | Sed-Chr6:40429758 | Sed01g0619 | Sed-Chr1:4410541 | 4.10E-49 | transposed | |
Sed01g0619 | Sed-Chr1:4410541 | Sed04g3758 | Sed-Chr4:46261632 | 1.90E-267 | wgd | |
Sed01g0619 | Sed-Chr1:4410541 | Sed05g3024 | Sed-Chr5:40702391 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78553 | PF00069 | Pkinase | 1.40E-61 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0619 | K20715 | - | csv:101215355 | 1597.02 |