Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0633 ATGGAGAAACCCAGAAATGGGTTGAGTCCTTGTTCGTCGATTTCTGATGAAGATTTGGTTAAGGATTTGATTGAAGCGAACGAACTAATCGAATCCATTGGAGGGTTTTCTGGGTTTCGCAAGACGCAGTTGAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTCTGTCATTGTTGGAGGAGATTCGGGACCTTCATCATATGGTTCCTGTTGAGTCTTTGAGTTCTCATCTTGGGTTTTTGAAAGAAGCTCTTGTTATGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTATCTGGCTTTTGAGAACGAGGCTGTGATGGCTAGGTTTCATGGTGTTTACGATAAATTGAAGGAGGCTCTCGATGGGATGCCTTATGATGAGCTTGGAATTTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCTACGCAACTCAAAAGAGCCAAGTGTCGAAAAGATACACAAGACATGGAATTAGCAATGGACATGATGGTTGTGTTTTCAAAACACGATGAGAGAAATGCTGACCCTGTTATACTTGAAAGATTGGCAAATAAACTGGAACTACATAAAATTGCAGATTTGGAAGAAGAAACCATAGCTGTTCAAAAATTAGTTAAACGTAGAGGTGGATCGAATTCGGAAAGCCTCCAGCAAATTTTAGACCTCCTATGCAAGTTTAAACGAATTGCAGGTATGGACACTAATGTTGCTCCTGATGATCCTGTTGTATCGAAACGTCTGGAGCGTTGCCAGTCTACATTAATCCCTCATGAATTCCTCTGTCCAATTACCTTAGAAATCATGGCAGAACCTGTCATTGTGGCAACTGGGCAGACTTATGATCGAGAAAGTATACAGAAATGGTTGAATTCTAATCACCGGACCTGCCCGAAAACTGGACAAACTTTGGTGCATTTGTCCCTAGCTCCAAATTATGCCCTCAAGAACCTTATTTTGCAGTGGTGTCAAAAGAATGACTATGAACTACCAAAAAAGGAAGTGGTTGCTGGATTGGGTGGAACTCCACCCGAATTTGCTGAGGAAATGTCCTCCCTAGTTAACGATCTATCGTCAAGTCGGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGGGTCCTCGCCAAGGAGAATCCCGAGAACCGAGTTTGGATTGCGAATAGCGGAGTCATCCCTCCATTGGTTAAGCTTCTCTCCTATCCAGATCTCAATTTCCAAGAACACACCGTGACTGCGCTTTTGAACTTGTCTATCGACGACTCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATTGAGATCCTGCAGTATGGAACAGAGGCGGCGAAGGAGAATTCTGCTGCTGCCCTGTTTAGCTTGTCGATGTTAGATGAAAACAAGGTTCTCATCGGATCTCTTAAGGGAATCCTGCCGTTAGTAGATCTTCTTCGAAACGGTACAATCCGAGGAAAGAAGGATGCTGCCACTGCACTCTTCAACCTGTCATTAAATCAATCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATCCCACCCGTTCTCTCTTTACTCAAGGACAAGAACTTAGGAATGATTGATGAAGCTTTATCAATCTTGTTACTCCTCACATCAAATCCTGAGGGGCGAGCCGAGATCAGTAACAACCCTTTCATAGAAATTCTAGTCGACATAATAAAAGACGGTACTCCGAAGAACAAGGAATGTGCTACATCATTACTTCTAGAGCTTGGACTCAACAATTCACCTTCCATTTTGGTTGCACTGCAGTTTGGTGTGTATGAGCATTTGATAGAGCTCACAAGAAGTGGAACAAGTAGAGCCCAGAGAAAAGCGAACTCACTTTTGCAGTATATGACCAAGTGTGAACACATTCCTTAA 1914 42.89 MEKPRNGLSPCSSISDEDLVKDLIEANELIESIGGFSGFRKTQLKECLNLVRRLKMLLSLLEEIRDLHHMVPVESLSSHLGFLKEALVMAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGMPYDELGISVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKHDERNADPVILERLANKLELHKIADLEEETIAVQKLVKRRGGSNSESLQQILDLLCKFKRIAGMDTNVAPDDPVVSKRLERCQSTLIPHEFLCPITLEIMAEPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKNDYELPKKEVVAGLGGTPPEFAEEMSSLVNDLSSSRLDVQREAIIKIRVLAKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDSNKRLIAREGAIPAIIEILQYGTEAAKENSAAALFSLSMLDENKVLIGSLKGILPLVDLLRNGTIRGKKDAATALFNLSLNQSNKSRAIKAGIIPPVLSLLKDKNLGMIDEALSILLLLTSNPEGRAEISNNPFIEILVDIIKDGTPKNKECATSLLLELGLNNSPSILVALQFGVYEHLIELTRSGTSRAQRKANSLLQYMTKCEHIP 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4550941 4556340 - Sed0008065.1 Sed01g0633 699937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0633 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 337 IPR013083 -
Sed01g0633 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 PANTHER U BOX DOMAIN-CONTAINING 42 632 - -
Sed01g0633 637 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 Coils Coil 138 158 - -
Sed01g0633 637 SMART Ubox_2 266 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g0633 637 FunFam RING-type E3 ubiquitin transferase 348 636 - -
Sed01g0633 637 CDD RING-Ubox_PUB 264 316 IPR045210 -
Sed01g0633 637 SMART arm_5 468 508 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 SMART arm_5 592 632 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 SMART arm_5 427 467 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 SMART arm_5 386 426 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 SMART arm_5 509 549 IPR000225 GO:0005515(InterPro)
Sed01g0633 637 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g0633 637 FunFam RING-type E3 ubiquitin transferase 259 336 - -
Sed01g0633 637 Pfam U-box domain 263 333 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g0633 637 Gene3D - 40 131 IPR036537 GO:0007166(InterPro)
Sed01g0633 637 FunFam RING-type E3 ubiquitin transferase 16 133 - -
Sed01g0633 637 Gene3D - 349 495 IPR011989 -
Sed01g0633 637 SUPERFAMILY RING/U-box 263 338 - -
Sed01g0633 637 Gene3D - 496 636 IPR011989 -
Sed01g0633 637 SUPERFAMILY ARM repeat 357 631 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0633 Sed-Chr1:4550941 Sed01g1077 Sed-Chr1:8109319 1.80E-83 dispersed
Sed01g0633 Sed-Chr1:4550941 Sed05g3004 Sed-Chr5:40619774 1.80E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0633 - - - 0.0