Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0634 ATGGAGAACAGCGGAGTTGTGAAGGAGTGGTTCGATCTCGTCGATTCAGACAAATCTGGAAGCATCACAGCTCCTCAGCTTCAGAAAGCTCTGGCCGTCGGTAACCTAAACTTCTCCCTCTCCACCGTCCAGCAAATGATCAGAATGTATGATTTTGATAGAAATGGAACTATGAGCTTCGAAGAGTTTGTAGTTCTCAACAAGTTCCTCCTCAAGCTTCAGCAAGCCTTCTCCGACTCTGAAAGAGGTCGGGGTTATCTAGTCCCAGATGATGTATACGAGGCATTGGTTAAAATTGGCTTCACACTGGACTCTCCGGCTTTTTATACTGTCTGCGAGAGCTTTGATCAAAAGAAGAACGGGAGATTTCGGCTCGACGACTTCATATCTCTCTGTATATTTGTTCAATCGGCTGGGAATTTGTTCAATTCCTTTGATACCGCCAAACAAGGCAGAGTGACGCTAGATCTCAACCAATTTGTCTATTGCACTGCCAATTGTAGGATATGA 510 44.9 MENSGVVKEWFDLVDSDKSGSITAPQLQKALAVGNLNFSLSTVQQMIRMYDFDRNGTMSFEEFVVLNKFLLKLQQAFSDSERGRGYLVPDDVYEALVKIGFTLDSPAFYTVCESFDQKKNGRFRLDDFISLCIFVQSAGNLFNSFDTAKQGRVTLDLNQFVYCTANCRI 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4569761 4573202 + Sed0023624.1 Sed01g0634 699938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0634 169 Gene3D - 1 167 - -
Sed01g0634 169 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Sed01g0634 169 SUPERFAMILY EF-hand 7 165 IPR011992 -
Sed01g0634 169 Pfam EF-hand domain pair 8 64 IPR002048 GO:0005509(InterPro)
Sed01g0634 169 CDD EFh_PEF_ALG-2_like 8 167 - -
Sed01g0634 169 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509(InterPro)
Sed01g0634 169 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509(InterPro)
Sed01g0634 169 PANTHER PEFLIN 6 167 IPR051426 -
Sed01g0634 169 SMART efh_1 42 70 IPR002048 GO:0005509(InterPro)
Sed01g0634 169 SMART efh_1 6 34 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0634 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0634 . . . . . . . . Bhi10g01252 Tan05g1059 Cmetu11g1933 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011282 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31