Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0647 | ATGGATTTCTCCCTCAAATCTTTCAAATCCAACGGCTCTTTCAAGTACGCGAAGAAGCTCCCCGGAACAGATCATGAACACCTCCCCATTCTTTCAGATCAGGACCCGGATGTTCTTCGCCGGCGACATTCGAGTATCCCGGCGGCGTCCGACCGGCGAGACGTCATCCTCAAGATCGACCAGGGTGATGCTTCCAGGATGAGCTATGATTTCTTGAATGATGGTGATCGGAGTGAGGATTTTGAGTTCAGGCAACCCAGGAAGGATATGGAGGATCCGCCTTCCAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATTTCGTTGGATATGGATATGGATATGGAAATGTTGGAGCTACCGCTTCATAAGCCTCTAACTCCGGTTGCGGAATCTCCGATGCGACGGAGCTCGAGAGAAATAAGGTCTACTTCAGAGGTTTCTGAGAATGATTCGATTCGAAGACGGTTTCGAGACTCGCCGGCCGATGAAGAGCATAGAGGAGGACAGGATCAGCAACCGCAGCAACGCGATCCTCGAAACGGCAGTGGTCACAATGAAACCGGCGCTGAGGTTTTGAAATGCACATCTAATTCGTCGTTTCAGAGAAAATCTAGCTTCGTTGGGGCTAAACCTAAGTCCAGATTGCTCGATCCGCCTCGGTCGGGCCGCGTGCCGAAATCGGGGCAAATGCGGTCGGGGTTGTTGTCGAAAGCCTTGGATGAAGAAGAGGACGATCCATTTGTGGAAGAAGATCTTCCAGATGAGTATAAGAAGGCGAATCTAGGTATTCTTACTCTGTTACAATGGGCGAGTTTGATTTTGATAATAGCAGCACTGGTTTGCACTTTGACAATTGGTTACTGGAGGAGGAAGAAGCCATGGAAGCTTGAGTTATGGAAATGGGAAGTTATGATTCTAGTTCTGATATGTGGAAGGCTGGTTTCTGGATGGGGGATTAGAATCATCGTCTTCTTCATCGAGAGAAACTTTCTACTGCGTAAACGGGTTCTATACTTCGTTTATGGAGTTAGAAAGGCAGTTCAGAATTGTCTCTGGTTGGGTCTGGTTTTAATTGCTTGGAACTTTCTCTTTGATGACAAAGTTCAGAGAGAAGTTAAGAGCAATGCCCTTGTTTATGTCACCAAAGTTCTTGTATGCCTTCTTGTAAGCACTTTGGTTTGGCTTGTGAAAACGTTGATGGTCAAGATTCTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAGGACGCGTTGTTTAATCAATATGTAATCGAGACACTGTCGGGGCCGCCGTTGATAGAGAATCGAAAGAATGAGGAAGAAGAAGAGAGACTTGCAAAAGAGGTTACTGAGTTGCAGAATGCAGGGGTCATCATTCCCCCTGATCTTAAGGCAAGTTCCTGTGCAACTCCAAAGGGTGTGCGAGTGATTGGAAGCCCTCATGGAAAAAGCGCTAAGCTCTCCCGGGCGCTGTCGAAAAATGGCGATGAGGGTATAACGATTGATCACTTGCATAAGCTTAGTCCTAGGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATTGTTCGATATGGGGCTCTTTCGACTTTGGATGAACAGATAAACGATTCAACTAATGAAGAGGATGAATCAGCAACTCAGATTAGGAGTGAATTTGAGGCAAAAGTTGCTGCCAAGAAGATTTTTCAGAACGTGGCTAGAAATTGTTCCAAATACATCTACCTAGAGGACTTAATGCGTTTCATGCAAGAAGACGAAGCTTCAAAAACCATGAATCTCTTTGAAGGAGCATCTGAGAGCAAGAAAATAAGCAAATCATCGTTGAAAAATTGGGTGGTCACTGCCTTCAGAGAACGAAGGGCACTAGCTTTGACCCTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTGTAATTCTCGTTATTTGGCTTCTAATTCTGGGTATAGCCACCGGCAAGTTTCTCCTATTTGTAACCTCTCAACTTGTCTTGGTCGCATTTGTATTTGGAAATACTTGCAAGACTATATTTGAAGCAATCATCTTCTTGTTTGTGATGCATCCATTTGATGTCGGCGACCGATGCGAAATTGATGGCGTTCAGATGATTGTAGAAGAAATGAACATTCTGACGACCGTTTTTCTAAGATACGACAATCAGAAGATCATATTTCCGAATAGTGTTCTCGCAACCAAGGCCATCCACAACTACTACCGCAGTCCCGACATGGGCGATGCCATAGAGTTCTGTCTTCACATATCTACTCCGCCAGAGAAAATTGCTGTCATGAGACAGAGAATAGTAAGTTACATTGAGGGCAAGAAAGAGCACTGGTGTCCTGGGCCAACAATTATTCTCAAGGATGTAGAAGAGTTAAATAGGATGAGAATAGCAATATGGCCTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGACGAGGAGAGCCCTTTTGGTCGAAGAACTGGTTAAAATCTTCCAAGAGCTCGACCTTCAATACCGTCTGCTGCCGCTTGATATCAATGTCCGTTCGTTGCCGCTGGTGAACTCTACCAGGCTTCCAGATACTTGGACAGCCACTGCAAGTTGA | 2652 | 45.17 | MDFSLKSFKSNGSFKYAKKLPGTDHEHLPILSDQDPDVLRRRHSSIPAASDRRDVILKIDQGDASRMSYDFLNDGDRSEDFEFRQPRKDMEDPPSKLIGQFLHKQKASGEISLDMDMDMEMLELPLHKPLTPVAESPMRRSSREIRSTSEVSENDSIRRRFRDSPADEEHRGGQDQQPQQRDPRNGSGHNETGAEVLKCTSNSSFQRKSSFVGAKPKSRLLDPPRSGRVPKSGQMRSGLLSKALDEEEDDPFVEEDLPDEYKKANLGILTLLQWASLILIIAALVCTLTIGYWRRKKPWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALVYVTKVLVCLLVSTLVWLVKTLMVKILASSFHVSTYFDRIQDALFNQYVIETLSGPPLIENRKNEEEEERLAKEVTELQNAGVIIPPDLKASSCATPKGVRVIGSPHGKSAKLSRALSKNGDEGITIDHLHKLSPRNVSAWNMKRLMNIVRYGALSTLDEQINDSTNEEDESATQIRSEFEAKVAAKKIFQNVARNCSKYIYLEDLMRFMQEDEASKTMNLFEGASESKKISKSSLKNWVVTAFRERRALALTLNDTKTAVNKLHRMVNILVSVVILVIWLLILGIATGKFLLFVTSQLVLVAFVFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDAIEFCLHISTPPEKIAVMRQRIVSYIEGKKEHWCPGPTIILKDVEELNRMRIAIWPTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPLVNSTRLPDTWTATAS | 883 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4727690 | 4733425 | + | Sed0020359.1 | Sed01g0647 | 699951 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0647 | 883 | MobiDBLite | consensus disorder prediction | 139 | 177 | - | - | |
Sed01g0647 | 883 | MobiDBLite | consensus disorder prediction | 207 | 236 | - | - | |
Sed01g0647 | 883 | SUPERFAMILY | Sm-like ribonucleoproteins | 697 | 756 | IPR010920 | - | |
Sed01g0647 | 883 | MobiDBLite | consensus disorder prediction | 19 | 38 | - | - | |
Sed01g0647 | 883 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Sed01g0647 | 883 | MobiDBLite | consensus disorder prediction | 130 | 193 | - | - | |
Sed01g0647 | 883 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 48 | 880 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER) | |
Sed01g0647 | 883 | Coils | Coil | 443 | 463 | - | - | |
Sed01g0647 | 883 | Pfam | Mechanosensitive ion channel, beta-domain | 700 | 757 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g0647 | 883 | PIRSF | Memb_At2g17000 | 47 | 883 | IPR016688 | - | |
Sed01g0647 | 883 | FunFam | Predicted mechanosensitive ion channel | 707 | 756 | - | - | |
Sed01g0647 | 883 | Gene3D | - | 707 | 756 | IPR023408 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0647 | Sed-Chr1:4727690 | Sed05g2203 | Sed-Chr5:34836664 | 1.50E-285 | dispersed | |
Sed01g0647 | Sed-Chr1:4727690 | Sed04g3825 | Sed-Chr4:46705640 | 2.20E-281 | wgd | |
Sed01g0647 | Sed-Chr1:4727690 | Sed05g3519 | Sed-Chr5:43835163 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0647 | K22048 | - | csv:101210264 | 1324.69 |