Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0647 ATGGATTTCTCCCTCAAATCTTTCAAATCCAACGGCTCTTTCAAGTACGCGAAGAAGCTCCCCGGAACAGATCATGAACACCTCCCCATTCTTTCAGATCAGGACCCGGATGTTCTTCGCCGGCGACATTCGAGTATCCCGGCGGCGTCCGACCGGCGAGACGTCATCCTCAAGATCGACCAGGGTGATGCTTCCAGGATGAGCTATGATTTCTTGAATGATGGTGATCGGAGTGAGGATTTTGAGTTCAGGCAACCCAGGAAGGATATGGAGGATCCGCCTTCCAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATTTCGTTGGATATGGATATGGATATGGAAATGTTGGAGCTACCGCTTCATAAGCCTCTAACTCCGGTTGCGGAATCTCCGATGCGACGGAGCTCGAGAGAAATAAGGTCTACTTCAGAGGTTTCTGAGAATGATTCGATTCGAAGACGGTTTCGAGACTCGCCGGCCGATGAAGAGCATAGAGGAGGACAGGATCAGCAACCGCAGCAACGCGATCCTCGAAACGGCAGTGGTCACAATGAAACCGGCGCTGAGGTTTTGAAATGCACATCTAATTCGTCGTTTCAGAGAAAATCTAGCTTCGTTGGGGCTAAACCTAAGTCCAGATTGCTCGATCCGCCTCGGTCGGGCCGCGTGCCGAAATCGGGGCAAATGCGGTCGGGGTTGTTGTCGAAAGCCTTGGATGAAGAAGAGGACGATCCATTTGTGGAAGAAGATCTTCCAGATGAGTATAAGAAGGCGAATCTAGGTATTCTTACTCTGTTACAATGGGCGAGTTTGATTTTGATAATAGCAGCACTGGTTTGCACTTTGACAATTGGTTACTGGAGGAGGAAGAAGCCATGGAAGCTTGAGTTATGGAAATGGGAAGTTATGATTCTAGTTCTGATATGTGGAAGGCTGGTTTCTGGATGGGGGATTAGAATCATCGTCTTCTTCATCGAGAGAAACTTTCTACTGCGTAAACGGGTTCTATACTTCGTTTATGGAGTTAGAAAGGCAGTTCAGAATTGTCTCTGGTTGGGTCTGGTTTTAATTGCTTGGAACTTTCTCTTTGATGACAAAGTTCAGAGAGAAGTTAAGAGCAATGCCCTTGTTTATGTCACCAAAGTTCTTGTATGCCTTCTTGTAAGCACTTTGGTTTGGCTTGTGAAAACGTTGATGGTCAAGATTCTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAGGACGCGTTGTTTAATCAATATGTAATCGAGACACTGTCGGGGCCGCCGTTGATAGAGAATCGAAAGAATGAGGAAGAAGAAGAGAGACTTGCAAAAGAGGTTACTGAGTTGCAGAATGCAGGGGTCATCATTCCCCCTGATCTTAAGGCAAGTTCCTGTGCAACTCCAAAGGGTGTGCGAGTGATTGGAAGCCCTCATGGAAAAAGCGCTAAGCTCTCCCGGGCGCTGTCGAAAAATGGCGATGAGGGTATAACGATTGATCACTTGCATAAGCTTAGTCCTAGGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATTGTTCGATATGGGGCTCTTTCGACTTTGGATGAACAGATAAACGATTCAACTAATGAAGAGGATGAATCAGCAACTCAGATTAGGAGTGAATTTGAGGCAAAAGTTGCTGCCAAGAAGATTTTTCAGAACGTGGCTAGAAATTGTTCCAAATACATCTACCTAGAGGACTTAATGCGTTTCATGCAAGAAGACGAAGCTTCAAAAACCATGAATCTCTTTGAAGGAGCATCTGAGAGCAAGAAAATAAGCAAATCATCGTTGAAAAATTGGGTGGTCACTGCCTTCAGAGAACGAAGGGCACTAGCTTTGACCCTGAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTGTAATTCTCGTTATTTGGCTTCTAATTCTGGGTATAGCCACCGGCAAGTTTCTCCTATTTGTAACCTCTCAACTTGTCTTGGTCGCATTTGTATTTGGAAATACTTGCAAGACTATATTTGAAGCAATCATCTTCTTGTTTGTGATGCATCCATTTGATGTCGGCGACCGATGCGAAATTGATGGCGTTCAGATGATTGTAGAAGAAATGAACATTCTGACGACCGTTTTTCTAAGATACGACAATCAGAAGATCATATTTCCGAATAGTGTTCTCGCAACCAAGGCCATCCACAACTACTACCGCAGTCCCGACATGGGCGATGCCATAGAGTTCTGTCTTCACATATCTACTCCGCCAGAGAAAATTGCTGTCATGAGACAGAGAATAGTAAGTTACATTGAGGGCAAGAAAGAGCACTGGTGTCCTGGGCCAACAATTATTCTCAAGGATGTAGAAGAGTTAAATAGGATGAGAATAGCAATATGGCCTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGACGAGGAGAGCCCTTTTGGTCGAAGAACTGGTTAAAATCTTCCAAGAGCTCGACCTTCAATACCGTCTGCTGCCGCTTGATATCAATGTCCGTTCGTTGCCGCTGGTGAACTCTACCAGGCTTCCAGATACTTGGACAGCCACTGCAAGTTGA 2652 45.17 MDFSLKSFKSNGSFKYAKKLPGTDHEHLPILSDQDPDVLRRRHSSIPAASDRRDVILKIDQGDASRMSYDFLNDGDRSEDFEFRQPRKDMEDPPSKLIGQFLHKQKASGEISLDMDMDMEMLELPLHKPLTPVAESPMRRSSREIRSTSEVSENDSIRRRFRDSPADEEHRGGQDQQPQQRDPRNGSGHNETGAEVLKCTSNSSFQRKSSFVGAKPKSRLLDPPRSGRVPKSGQMRSGLLSKALDEEEDDPFVEEDLPDEYKKANLGILTLLQWASLILIIAALVCTLTIGYWRRKKPWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALVYVTKVLVCLLVSTLVWLVKTLMVKILASSFHVSTYFDRIQDALFNQYVIETLSGPPLIENRKNEEEEERLAKEVTELQNAGVIIPPDLKASSCATPKGVRVIGSPHGKSAKLSRALSKNGDEGITIDHLHKLSPRNVSAWNMKRLMNIVRYGALSTLDEQINDSTNEEDESATQIRSEFEAKVAAKKIFQNVARNCSKYIYLEDLMRFMQEDEASKTMNLFEGASESKKISKSSLKNWVVTAFRERRALALTLNDTKTAVNKLHRMVNILVSVVILVIWLLILGIATGKFLLFVTSQLVLVAFVFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDAIEFCLHISTPPEKIAVMRQRIVSYIEGKKEHWCPGPTIILKDVEELNRMRIAIWPTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPLVNSTRLPDTWTATAS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4727690 4733425 + Sed0020359.1 Sed01g0647 699951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0647 883 MobiDBLite consensus disorder prediction 139 177 - -
Sed01g0647 883 MobiDBLite consensus disorder prediction 207 236 - -
Sed01g0647 883 SUPERFAMILY Sm-like ribonucleoproteins 697 756 IPR010920 -
Sed01g0647 883 MobiDBLite consensus disorder prediction 19 38 - -
Sed01g0647 883 MobiDBLite consensus disorder prediction 1 38 - -
Sed01g0647 883 MobiDBLite consensus disorder prediction 130 193 - -
Sed01g0647 883 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 48 880 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Sed01g0647 883 Coils Coil 443 463 - -
Sed01g0647 883 Pfam Mechanosensitive ion channel, beta-domain 700 757 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g0647 883 PIRSF Memb_At2g17000 47 883 IPR016688 -
Sed01g0647 883 FunFam Predicted mechanosensitive ion channel 707 756 - -
Sed01g0647 883 Gene3D - 707 756 IPR023408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0647 Sed-Chr1:4727690 Sed05g2203 Sed-Chr5:34836664 1.50E-285 dispersed
Sed01g0647 Sed-Chr1:4727690 Sed04g3825 Sed-Chr4:46705640 2.20E-281 wgd
Sed01g0647 Sed-Chr1:4727690 Sed05g3519 Sed-Chr5:43835163 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0647 K22048 - csv:101210264 1324.69