Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0661 ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCGGCATGTGCTCAAAGGTTCAGATGCTGGTGGTCGACAGGATGGTCTTCTATGGTACAAGGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCAAACAATTTACTTGAAGATCAAAGCCAGATAGAGTCTGGGAATTTGAGCTTGCACGAGTTCGGGCCGTATGGTACCTTTGTTGGTGTGTATGATGGGCATGGAGGGCCCGAGATATCTCGCTACGTAAATGATCACCTTTTCCAGCATCTTAAAAGGCTTACTTCAGAACAACAATCCATGTCAGTGGATATCATACGAAAAGCATTTCAAGCTACTGAAGAGGGGGTCATAGCTCAAGTTTCGAATCAATGGCCGATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGGGTAATTTGTGGTGGAACCCTTTACATTGCTAGCCTTGGCGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCCGTTCAGTTGTCGGCTGAGCATAATGCATCTATAGAATCTGTGAGGCAGGAGCTCCATGCCCTGCATCCTGATGACCCACATATTGTAGTTTTGAAGCATAATGTATGGCGTGTGAAGGGCCTTATACAGATTTCTCGATCTATCGGAGACGTCTATTTAAAGAAAGCGGAGTTCAACCGAGAGCCACTTTATGCTAAGTTCCGCCTTCGTGAACCTATTAAAAAGCCGATACTGAGTGCCGAACCATCTGTTTCGGTGCTCCAATTACAGTCACATGATCAATTTATTATATTTGCTTCAGATGGGCTATGGGAACACCTTAGCAACCAGGAAGCTGTTCATATTGTCCAAAACCATCCACGTAGTGGAAGTGCAAGGAAGCTGGTGAAAACAGCATTGCAAGAAGCAGCAAAGAAAAGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGGGGCGTACGACGACATTTCCATGATGACATCACAGTAATTGTTGTGTTTCTCGATTCAAACCTCGTGATCCGTGCTAGCTCTACAAAATGTGCAAGCCTATCCATACGAGGGGGTGGAGTTAACTTGCGACCAAACTCATTGGCTCCTTGCACCACACCATCAGGCACTGGCATGGCCTGA 1194 45.98 MFSELMNFLRACFRPRSDRHVLKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQIESGNLSLHEFGPYGTFVGVYDGHGGPEISRYVNDHLFQHLKRLTSEQQSMSVDIIRKAFQATEEGVIAQVSNQWPMRPQIAAVGSCCLVGVICGGTLYIASLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELHALHPDDPHIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPIKKPILSAEPSVSVLQLQSHDQFIIFASDGLWEHLSNQEAVHIVQNHPRSGSARKLVKTALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVIRASSTKCASLSIRGGGVNLRPNSLAPCTTPSGTGMA 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4862227 4866630 - Sed0019398.1 Sed01g0661 699965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0661 397 SMART PP2C_4 39 353 IPR001932 -
Sed01g0661 397 SUPERFAMILY PP2C-like 58 356 IPR036457 -
Sed01g0661 397 FunFam Phosphatase 2C family protein 36 365 - -
Sed01g0661 397 CDD PP2Cc 48 355 IPR001932 -
Sed01g0661 397 PANTHER PROTEIN PHOSPHATASE 39 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g0661 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Sed01g0661 397 Gene3D - 36 364 IPR036457 -
Sed01g0661 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Sed01g0661 397 Pfam Protein phosphatase 2C 80 323 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0661 Sed-Chr1:4862227 Sed05g2248 Sed-Chr5:35186638 1.10E-174 dispersed
Sed01g0661 Sed-Chr1:4862227 Sed01g0662 Sed-Chr1:4862227 1.70E-228 tandem
Sed01g0661 Sed-Chr1:4862227 Sed04g3837 Sed-Chr4:46784349 4.30E-176 wgd
Sed01g0661 Sed-Chr1:4862227 Sed05g3510 Sed-Chr5:43766552 4.30E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0661 - - - 0.0