Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0665 ATGGATCAGAAAACACACAGTGAACATTCCAATGAAACAATTTCCATTTCTCCTAAGACCCATAACCCAATTCAGCCATTAGACTCTGCTTCTCATCAGCCATTTCCTTTCTCGAATCCACCTTCCCCTTCTTTATTTCCCTTAGCTTTGGCACCTATGCCTCATCGCCCATCGGCTCGGCCGACCCATAATCAACAACAACAACAACAGCTAAACTCGAGGCCGGGGCATAAGCCTCAAGTGCGGCCTATAAACGCGACGAAGCTATACAGAGGAGTGAGGCAGAGACATTGGGGTAAATGGGTAGCGGAGATTCGTCTCCCTCGAACCCGTAACCGTCTCTGGCTCGGTACATTCTCCACTGCCGAAGACGCAGCCATGGCCTACGATCGACAAGCTTTCAAGTTGAGAGGAGAAAATGCAAGGCTTAATTTTCCACAACTGTTTTTGAATAAACACAAAGAAGAAAGTTCACCTCCCCAAAAGGATCCAGACAACAACTTAGAGCCAAATAACAAGGCCGAGGCCGAAACCGAGACCGAGACCGAGACCGAGGCCGCGGCAGGGGAGATGGTTTGGAGAGAAATGGCAGAGGCTTGGTTAAGCACAATGCCAGCAGGGTGGGGACCTGGCAGCCCTGTTTGGGATGATTTGTACACCAACAATGATATCCCAATGCAGCCATTTCCATTTGATAACCCAATTCAGCAAGATTTGTTTGACTTAACTTCATCTTCTGCATCTTGCCCCATGAACCCTTTCTTTCTCAAGGATCAAGATTAA 783 48.02 MDQKTHSEHSNETISISPKTHNPIQPLDSASHQPFPFSNPPSPSLFPLALAPMPHRPSARPTHNQQQQQQLNSRPGHKPQVRPINATKLYRGVRQRHWGKWVAEIRLPRTRNRLWLGTFSTAEDAAMAYDRQAFKLRGENARLNFPQLFLNKHKEESSPPQKDPDNNLEPNNKAEAETETETETEAAAGEMVWREMAEAWLSTMPAGWGPGSPVWDDLYTNNDIPMQPFPFDNPIQQDLFDLTSSSASCPMNPFFLKDQD 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4880484 4881266 - Sed0006998.1 Sed01g0665 699969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0665 260 Pfam AP2 domain 89 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0665 260 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677(InterPro)
Sed01g0665 260 SMART rav1_2 89 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0665 260 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0665 260 MobiDBLite consensus disorder prediction 153 187 - -
Sed01g0665 260 MobiDBLite consensus disorder prediction 155 180 - -
Sed01g0665 260 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0665 260 MobiDBLite consensus disorder prediction 59 76 - -
Sed01g0665 260 MobiDBLite consensus disorder prediction 1 83 - -
Sed01g0665 260 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 183 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed01g0665 260 FunFam Ethylene-responsive transcription factor 2 88 147 - -
Sed01g0665 260 CDD AP2 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0665 260 MobiDBLite consensus disorder prediction 36 50 - -
Sed01g0665 260 MobiDBLite consensus disorder prediction 10 35 - -
Sed01g0665 260 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0665 260 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0665 Sed-Chr1:4880484 Sed05g1951 Sed-Chr5:32866141 3.40E-44 dispersed
Sed01g0665 Sed-Chr1:4880484 Sed05g3138 Sed-Chr5:41461014 1.40E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37136 PF00847 AP2 1.70E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0665 - - - 0.0