Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0676 ATGGGAACCTGTTTATCTACTGGAATTCATAGTGGAACAAATGGAGAGAGAGTTTCTGGATCCTGTTTGGGGATTGAAAGAAAGAGAACATTCTCAGATCATATTTTTTCTCTGCAGCATTTGAATTCTATACCTAATAGGCTTGTTTATAATGGGAAGACGAAAAATTCTTGCATTTTCACTCAGCAGGGTCTCAAGGGTATCAACCAGGATGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGCAACTTTCTGTGGGATATTTGATGGTCACGGCCCCAATGGTCATGTCGTTGCACGAAAGGTTAGAGATGTTTTGCCTAGAAAGCTGGTGTCATTCTGGCAGTCATCTCAGTTGAAGAATGGTAGATCAGATAGGACTTCTTGTCTCGGACGGAGTCGAAAGAATACAGAAGATAGTGAAGGGCAGGACATGGAAGGATCACAGGAGGATGAATCAAGTTCTTTATGGAGAAGAGCTTTCCTCAAAACATATAAAGCCATGGATAAGGAGCTCAAATCTCATCCCAAATTGGACTGTTTCTGTAGTGGCAGTACAGCAGTCACTCTAGTGAAGCAGGGCTCAGATCTATTCGTGGGAAGTATTGGGGATTCTCGGGCAATTCTTGGATCTAAAGACAGCAGTGATTCCCTTGTAGCAACCCAACTGACAGTAGATCTAAAGCCTGATTTGCCCAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTCTTTGCTTTGCAAGATGAGCCAGAAGTGTCAAGAGTGTGGCTGCCATTTGACAATGCACCTGGATTAGCCATGGCCCGAGCATTTGGCGACTTCTGTTTGAAGGACTATGGAGTAATCTCTATCCCCGAATTCTCACACCACGTGCTTACAGACAATGATCTGTTTGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTTTTGAGCAATGAAGAGGTAGCTGAGATTGTACATTCTGCCTCATCTCGGTCATTGGCAGCACGAATGGTGGTAGACTCAGCTGCTCGTGAGTGGAAGCTCAAGTACCCTACATCGAAAATGGATGACTGTGCAGTCGTTTGCTTATTCTTGGACAGGAAAATGGATTTGGAATCGGAGAACGAAGAACAGGCTTCTTCTGCAACTCTGCAAACCAATCAAATGGGCAGCAATGCAGATTCAGATGAAGAGCAGAGGTTCGAGCCAAGTTTGGAAAGGAATTATACGGTTCGATCATTGGAAGAAAAGGACCAAATTGGAGGATTATCTTCACATAGTGAAGGGAATGGAGAATCCATGTCTGCTGAAGATGAGAATTGGTTAGGATTGGAGGGTGTAACAAGAGTAAACTCAATGGTTCAACTCCCTCGATTTTCTTGA 1377 43.94 MGTCLSTGIHSGTNGERVSGSCLGIERKRTFSDHIFSLQHLNSIPNRLVYNGKTKNSCIFTQQGLKGINQDAMVVWEDFISDGATFCGIFDGHGPNGHVVARKVRDVLPRKLVSFWQSSQLKNGRSDRTSCLGRSRKNTEDSEGQDMEGSQEDESSSLWRRAFLKTYKAMDKELKSHPKLDCFCSGSTAVTLVKQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVSRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHHVLTDNDLFVVLASDGVWDVLSNEEVAEIVHSASSRSLAARMVVDSAAREWKLKYPTSKMDDCAVVCLFLDRKMDLESENEEQASSATLQTNQMGSNADSDEEQRFEPSLERNYTVRSLEEKDQIGGLSSHSEGNGESMSAEDENWLGLEGVTRVNSMVQLPRFS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4958007 4961356 + Sed0026951.3 Sed01g0676 699980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0676 458 ProSiteProfiles PPM-type phosphatase domain profile. 56 363 IPR001932 -
Sed01g0676 458 MobiDBLite consensus disorder prediction 372 437 - -
Sed01g0676 458 SUPERFAMILY PP2C-like 49 364 IPR036457 -
Sed01g0676 458 Gene3D - 46 366 IPR036457 -
Sed01g0676 458 MobiDBLite consensus disorder prediction 393 420 - -
Sed01g0676 458 FunFam probable protein phosphatase 2C 52 47 366 - -
Sed01g0676 458 SMART PP2C_4 45 361 IPR001932 -
Sed01g0676 458 MobiDBLite consensus disorder prediction 123 155 - -
Sed01g0676 458 Pfam Protein phosphatase 2C 121 341 IPR001932 -
Sed01g0676 458 PANTHER PROTEIN PHOSPHATASE 58 362 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g0676 458 CDD PP2Cc 62 363 IPR001932 -
Sed01g0676 458 MobiDBLite consensus disorder prediction 374 392 - -
Sed01g0676 458 MobiDBLite consensus disorder prediction 129 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0676 Sed-Chr1:4958007 Sed01g0678 Sed-Chr1:4958088 7.50E-265 dispersed
Sed01g0675 Sed-Chr1:4958007 Sed01g0676 Sed-Chr1:4958007 7.50E-265 tandem
Sed01g0676 Sed-Chr1:4958007 Sed01g0677 Sed-Chr1:4958088 7.50E-265 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0676 - - - 0.0