Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0703 ATGCCTAAATTAGAAAAATTACAAACAAGACGGCCTGGATCTGCATCCGTGGTAGAGACTCTTGAAAAATGGAAAGATTACAATGATCACCTTGATACATGTAATGGAGCGGCCAGCACCCGTAAAGTGCCAGCGAAGGGATCAAAGAAGGGCTGCATGAAGGGCAAGGGTGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCGGAAATTCGCGCACCGAATAGGGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCACTTCAGCTCGCCTCAATTTTCCCAATATCTCAATTCCAACATTACTAAAAGAAAAAGAATCATCAACAAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCTTCTCTAGGGTCAACTTCACTAAGTCTGAGTTCCGAGTCCACAATAACGTCCGATCACTCTGAGGACTGTGCTGCTGAAGAAGTTGTCTAG 537 45.62 MPKLEKLQTRRPGSASVVETLEKWKDYNDHLDTCNGAASTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTSARLNFPNISIPTLLKEKESSTKDSPEIKRSSISSLGSTSLSLSSESTITSDHSEDCAAEEVV 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5141012 5144429 - Sed0010620.1 Sed01g0703 700007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0703 178 MobiDBLite consensus disorder prediction 132 178 - -
Sed01g0703 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 163 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Sed01g0703 178 MobiDBLite consensus disorder prediction 142 167 - -
Sed01g0703 178 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0703 178 SMART rav1_2 65 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0703 178 SUPERFAMILY DNA-binding domain 65 122 IPR016177 GO:0003677(InterPro)
Sed01g0703 178 Pfam AP2 domain 65 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0703 178 CDD AP2 64 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0703 178 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Sed01g0703 178 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0703 178 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0703 178 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0703 Sed-Chr1:5141012 Sed11g2141 Sed-Chr11:35265437 1.00E-47 dispersed
Sed01g0703 Sed-Chr1:5141012 Sed11g2140 Sed-Chr11:35265437 1.00E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37138 PF00847 AP2 4.50E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0703 - - - 0.0