Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0708 ATGAAATTCCAAGACCATAACCAGAATCAATACTCCCAACAGATATGCAGAACTATTGAGATCGATACAATCAATCCCCACCGCACTGTTTCGCCGCCGGTCGTAATGGAAGCTTCTGATGACGGCGACGGCCTCTACATCCCTCCTCTCAACTTCTCCATGGTTGATAATGCCGTTTTCCGCTCCGGCTTCCCTGATCCTGCTAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGTTCCATTATATGTTTATGCCCGGAGCCGTATCCTGAGCACAACATGGAGTTTCTCAAGTCTAACGGGATTCGATTGTATCAATTTGGAATTGAAAGCTACAAGGAGCCTTTCGTGAACATCCCAGATAATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGGAACCATCCAGTTCTCATACATTGCAAGAGAGGAAAGCATCGAACAGGTTGCCTTGTGGGATGCCTGAGAAAACTGCAAAAGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAGAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAATTGTTCGACATCTCTGACTTGAAGCATCTTCCCATGTCATTCTCATGCTCTAAGAGGTGA 627 46.09 MKFQDHNQNQYSQQICRTIEIDTINPHRTVSPPVVMEASDDGDGLYIPPLNFSMVDNAVFRSGFPDPANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLYQFGIESYKEPFVNIPDNMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLKHLPMSFSCSKR 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5188054 5192033 - Sed0018332.1 Sed01g0708 700012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0708 208 ProSiteProfiles Dual specificity protein phosphatase domain profile. 51 205 IPR020422 GO:0006470(InterPro)
Sed01g0708 208 FunFam probable tyrosine-protein phosphatase At1g05000 45 195 - -
Sed01g0708 208 ProSitePatterns Tyrosine specific protein phosphatases active site. 141 151 IPR016130 GO:0016311(InterPro)
Sed01g0708 208 Gene3D Protein tyrosine phosphatase superfamily 46 195 IPR029021 -
Sed01g0708 208 Pfam Tyrosine phosphatase family 46 198 IPR004861 -
Sed01g0708 208 PANTHER TYROSINE-PROTEIN PHOSPHATASE 22 201 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Sed01g0708 208 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 114 154 IPR000387 GO:0016311(InterPro)
Sed01g0708 208 PRINTS Plant and fungal dual specificity phosphatase signature 46 63 IPR020428 GO:0016791(InterPro)
Sed01g0708 208 PRINTS Plant and fungal dual specificity phosphatase signature 119 133 IPR020428 GO:0016791(InterPro)
Sed01g0708 208 PRINTS Plant and fungal dual specificity phosphatase signature 102 116 IPR020428 GO:0016791(InterPro)
Sed01g0708 208 PRINTS Plant and fungal dual specificity phosphatase signature 83 96 IPR020428 GO:0016791(InterPro)
Sed01g0708 208 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 193 IPR029021 -
Sed01g0708 208 CDD PFA-DSP_Siw14 45 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0708 Sed-Chr1:5188054 Sed05g1893 Sed-Chr5:32353316 2.70E-84 dispersed
Sed06g0972 Sed-Chr6:13290970 Sed01g0708 Sed-Chr1:5188054 7.80E-57 transposed
Sed08g1212 Sed-Chr8:25021100 Sed01g0708 Sed-Chr1:5188054 4.10E-58 transposed
Sed01g0708 Sed-Chr1:5188054 Sed04g3433 Sed-Chr4:44101419 4.90E-78 wgd
Sed01g0708 Sed-Chr1:5188054 Sed05g3223 Sed-Chr5:41876659 2.30E-104 wgd
Sed01g0708 Sed-Chr1:5188054 Sed05g1892 Sed-Chr5:32353316 8.90E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0708 K18045 - csv:101222170 364.385