Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g0709 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCACTGATATCTCAGAGTCGCCCTGGCGGTTGGAAATCAGTGATAATCACGATGGCGGCGATGCGGCTGAATCGAGCCCTTACCCCGATCGACCTGGCGAACCGGATTGTTTGTATTATATGAGAACTGGGTATTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTTTATGCTGCTCAGGGTGTTCTGTATAATGGGGAACTTCCAGAAAGAATTGGTCAACCTGACTGTGAGTATTTTCTGAAGACGGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACTTTTAACATGTTAGGCCTTCCCATGCGGCAGGAAGAAAAATCGTGCCCTTTTTATTTGCGCACTGGATCGTGTAAATTTGGAGTTTCGTGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGTTGCCTCAACCTCAACCTAGACCTGGTGCTTTGGGTTCTGCAGGAGCTCCATTCATGCCTTCATCTGGTTTACCATATGCTGGTGGAGTTCCTACTTGGTCATTGCCTAGAGTACAATATATGCCCGGACCATATGTACAAGGCCAGCAATCTTATGTTCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGATTGGAACACTTACATGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCCGTCAATTTGGACGAGTCCTATTCTAATGGGCAGTTGGCTTTATCGATATCGAATCTAACACTACCAGATCGACCTGATCAACCGGAATGTCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTCCATCATCCAAAACAAAGAATTGCACAATCAGCAACAAATGTGCTTGGGCTTCCTTCAAGACCCGGGCAAGCTGTATGTTTATACTACAATATGTATGGGCTCTGCAAATATGGCCCAAGTTGTAAATTTGACCATCCATCTGCAGCATATCCTTGTAATTATGGCTACACTCTGCCTGTGCTTGAATCAGCTTTTATAAAGTATCCTAGCAACAACTTTACGATGTCGTCACACGAGACCTTGCCCCCGGCGTTACCGAAATCTTCTGAATGGGTCCAGAAAGCTGATCCAACGGCGAACAAACGCCGAACTACCAATACGAAAGTTGTAGATGGCACACCTGAAGAGGCTTCCTCTGTTTCATGCTCATTACCAGCTGGTTCAGAAACTTTACAAGATTGA | 1305 | 44.75 | MPDNLQVQRNAVPNQSTDISESPWRLEISDNHDGGDAAESSPYPDRPGEPDCLYYMRTGYCSYGSNCRFNHPVYAAQGVLYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNMLGLPMRQEEKSCPFYLRTGSCKFGVSCKFNHPQPSPVGNMLPQPQPRPGALGSAGAPFMPSSGLPYAGGVPTWSLPRVQYMPGPYVQGQQSYVPVLVSPSQGAIAAQDWNTYMGNVSPVLPNLGYNSVNLDESYSNGQLALSISNLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVLGLPSRPGQAVCLYYNMYGLCKYGPSCKFDHPSAAYPCNYGYTLPVLESAFIKYPSNNFTMSSHETLPPALPKSSEWVQKADPTANKRRTTNTKVVDGTPEEASSVSCSLPAGSETLQD | 434 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 5213969 | 5217798 | + | Sed0021353.1 | Sed01g0709 | 700013 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g0709 | 434 | PANTHER | PROTEIN PHOSPHATASE RELATED | 35 | 349 | IPR050974 | GO:0003729(PANTHER) | |
| Sed01g0709 | 434 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | MobiDBLite | consensus disorder prediction | 379 | 434 | - | - | |
| Sed01g0709 | 434 | SUPERFAMILY | CCCH zinc finger | 281 | 306 | IPR036855 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SMART | c3hfinal6 | 278 | 305 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SMART | c3hfinal6 | 321 | 348 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 280 | 305 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 323 | 347 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 47 | 72 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | Gene3D | - | 119 | 170 | - | - | |
| Sed01g0709 | 434 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Sed01g0709 | 434 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | ProSiteProfiles | Zinc finger C3H1-type profile. | 278 | 306 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | MobiDBLite | consensus disorder prediction | 394 | 434 | - | - | |
| Sed01g0709 | 434 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Sed01g0709 | 434 | Gene3D | - | 43 | 118 | - | - | |
| Sed01g0709 | 434 | Gene3D | - | 276 | 354 | - | - | |
| Sed01g0709 | 434 | ProSiteProfiles | Zinc finger C3H1-type profile. | 321 | 349 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Sed01g0709 | 434 | SUPERFAMILY | CCCH zinc finger | 324 | 348 | IPR036855 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0709 | Sed-Chr1:5213969 | Sed05g3228 | Sed-Chr5:41922124 | 1.80E-127 | dispersed | |
| Sed01g0709 | Sed-Chr1:5213969 | Sed05g3227 | Sed-Chr5:41922124 | 7.60E-158 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 37139 | PF00642 | zf-CCCH | 2.30E-07 | CL0537 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g0709 | - | - | - | 0.0 |