Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0710 ATGCGGCGAGGCAGGCCCTCCGATCCATTCACAGAACCACCAAAATCGACCGTCCTGCCGGAAAATCACCTCAAAGAGATCCGATACAGAGGCGTCCGAAAGCGCCCTTGGGGCCGATACGCCGCCGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGCACCTTCGATTCCGCTGAAGATGCCGCTCGTGCCTACGACACCGCCGCTCGGTCCCTCCGTGGAGCCAAGGCCAAAACTAATTTCCCTTTACACCCATCCACGATTTCGATTCAGCAAATTGTTCCGTTCTACCATTCGCCGCCGGATTTGATCGATTCGAACGGGTTTGGCAAGATTGAGTGTGTTCAGGCGAACAGGCCGACGTCCAGCAGCTTGAGTTCCACTGTTGAGTCGTTTAGTGGACCGCGGATTTCGATGGTTCCATGGCGGCCGGCGCCGCCTGTTTCGCCGGACGATTGCCATAGCGACTGTGATTCTTCGTCCTCCGTCGTTGATGACGATGAGGTTTGTGTTCTTGCTTCTTTCCGTAGAGCTTTGCCGTTTGATCTTAACTTACCGCCTCCTATGGATGTTGTGGATTTAACTGGTGACGATCTTCAAGCTACTGCTTTATGCCTTTGA 630 53.97 MRRGRPSDPFTEPPKSTVLPENHLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEDAARAYDTAARSLRGAKAKTNFPLHPSTISIQQIVPFYHSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISMVPWRPAPPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5231683 5232954 + Sed0027602.1 Sed01g0710 700014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0710 209 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0710 209 Pfam AP2 domain 28 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0710 209 CDD AP2 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0710 209 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0710 209 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
Sed01g0710 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 171 - -
Sed01g0710 209 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0710 209 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0710 209 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Sed01g0710 209 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0710 Sed-Chr1:5231683 Sed04g2417 Sed-Chr4:37466487 2.00E-26 dispersed
Sed01g0710 Sed-Chr1:5231683 Sed04g3436 Sed-Chr4:44123467 1.30E-67 wgd
Sed01g0710 Sed-Chr1:5231683 Sed05g3230 Sed-Chr5:41941189 3.60E-97 wgd
Sed01g0710 Sed-Chr1:5231683 Sed05g1889 Sed-Chr5:32309138 3.20E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37140 PF00847 AP2 3.60E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0710 K09286 - csv:101221703 341.658