Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0710 | ATGCGGCGAGGCAGGCCCTCCGATCCATTCACAGAACCACCAAAATCGACCGTCCTGCCGGAAAATCACCTCAAAGAGATCCGATACAGAGGCGTCCGAAAGCGCCCTTGGGGCCGATACGCCGCCGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGCACCTTCGATTCCGCTGAAGATGCCGCTCGTGCCTACGACACCGCCGCTCGGTCCCTCCGTGGAGCCAAGGCCAAAACTAATTTCCCTTTACACCCATCCACGATTTCGATTCAGCAAATTGTTCCGTTCTACCATTCGCCGCCGGATTTGATCGATTCGAACGGGTTTGGCAAGATTGAGTGTGTTCAGGCGAACAGGCCGACGTCCAGCAGCTTGAGTTCCACTGTTGAGTCGTTTAGTGGACCGCGGATTTCGATGGTTCCATGGCGGCCGGCGCCGCCTGTTTCGCCGGACGATTGCCATAGCGACTGTGATTCTTCGTCCTCCGTCGTTGATGACGATGAGGTTTGTGTTCTTGCTTCTTTCCGTAGAGCTTTGCCGTTTGATCTTAACTTACCGCCTCCTATGGATGTTGTGGATTTAACTGGTGACGATCTTCAAGCTACTGCTTTATGCCTTTGA | 630 | 53.97 | MRRGRPSDPFTEPPKSTVLPENHLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEDAARAYDTAARSLRGAKAKTNFPLHPSTISIQQIVPFYHSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISMVPWRPAPPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5231683 | 5232954 | + | Sed0027602.1 | Sed01g0710 | 700014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0710 | 209 | Gene3D | AP2/ERF domain | 27 | 87 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g0710 | 209 | Pfam | AP2 domain | 28 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g0710 | 209 | CDD | AP2 | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g0710 | 209 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g0710 | 209 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677(InterPro) | |
Sed01g0710 | 209 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 22 | 171 | - | - | |
Sed01g0710 | 209 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g0710 | 209 | PRINTS | Ethylene responsive element binding protein signature | 51 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g0710 | 209 | FunFam | Ethylene-responsive transcription factor 2 | 28 | 87 | - | - | |
Sed01g0710 | 209 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0710 | Sed-Chr1:5231683 | Sed04g2417 | Sed-Chr4:37466487 | 2.00E-26 | dispersed | |
Sed01g0710 | Sed-Chr1:5231683 | Sed04g3436 | Sed-Chr4:44123467 | 1.30E-67 | wgd | |
Sed01g0710 | Sed-Chr1:5231683 | Sed05g3230 | Sed-Chr5:41941189 | 3.60E-97 | wgd | |
Sed01g0710 | Sed-Chr1:5231683 | Sed05g1889 | Sed-Chr5:32309138 | 3.20E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37140 | PF00847 | AP2 | 3.60E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0710 | K09286 | - | csv:101221703 | 341.658 |