Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0721 ATGGATGCTAGTGTTCGAGCTCGTTTCTCACTCGGCAAACAGTCCTCGCTCAAGCCGGAGCGTGAAGGCTCGGCTGTGGTTGACGATGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTATTTGGCGAATGATGGCGATTTGGATGGGATTAGGGAGCTGCTGGATTCGGGAACTGACGTGAATTTTCATGATACGGATGGTCGAACCTCTTTGCATGTTGCTGCTTGCCAGGGCAGGGTGGAGGTTGTTGAGTTGCTACTCCAAAGCGGCGCGGAGGTTGATGTTCAGGATAGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCATGGTGTGATCAATCTCTTAGAGAAACATGGTGCAAGGATACCGATGGCTCCAATGCTTGTGCAAAATGCTCGTGACGTTCCGGAATATGAGATCAATCCAAATGAGCTTGATTTTTCGAAGAGTGAGAACATTACAAAAGGAACTTTCTGCAGTGCATCATGGCGTGGAATTCAAGTGGCTGTGAAGACACTAGGGGAGGAAGTTTTCACCGATGAGGATAAAGTGAAAGCATTCAGGGATGAACTTGCATTACTTCAGAAGGTACGCCATCCTAATGTTGTGCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAATTCTTGCCCCAGGGGGACCTTCATGCATTCTTGAAGCGTAAAGGTTCATTGAAGCTATCGACATTTATAAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGTGATCTTGAACCTTCAAACATACTGCGGGACGATTCTGGCCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTGAAATTTTCAAATAGGGTCAAAGAAGACAGACCTGTGGCTTTGGCATGTCATGATACTTCATGGCGATATGTAGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAGAGTGGATGTCTTTTCTTTTGCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTATATAGCTGGTCAACGCCCATCATTTATGGCTCCATCTAATCGTTATGCACATGGAGTAAAGGAGTTAATCGAAGAATGTTGGGATGAGAGGCCACATAAAAGACCCACTTTTCGGCAAATAATTAGAAGGTTGGAGGATATTAACAGTCGACGTGTGCAAACAAGGAGTTTGAAGGTGAATCGATTCTGCGATTGTTTCACGAACTTGACATCCATGTTTAAAAGGGAAAGGACTAACCCTGGCAGCAGATCTTACTCGGAAGGCTAA 1380 44.06 MDASVRARFSLGKQSSLKPEREGSAVVDDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRVEVVELLLQSGAEVDVQDRWGSTPLADAIYYKNHGVINLLEKHGARIPMAPMLVQNARDVPEYEINPNELDFSKSENITKGTFCSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKVRHPNVVQFLGAVTQSSPMMIVTEFLPQGDLHAFLKRKGSLKLSTFIKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVALACHDTSWRYVAPEVYKNEEYDTRVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGQRPSFMAPSNRYAHGVKELIEECWDERPHKRPTFRQIIRRLEDINSRRVQTRSLKVNRFCDCFTNLTSMFKRERTNPGSRSYSEG 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5294382 5306310 + Sed0007975.1 Sed01g0721 700025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0721 459 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515(InterPro)
Sed01g0721 459 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Sed01g0721 459 ProSiteProfiles Protein kinase domain profile. 156 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0721 459 PIRSF ILK 2 436 - -
Sed01g0721 459 CDD STKc_MAP3K-like 162 415 - -
Sed01g0721 459 Gene3D Transferase(Phosphotransferase) domain 1 141 445 - -
Sed01g0721 459 FunFam Integrin-linked protein kinase family 23 147 - -
Sed01g0721 459 Gene3D - 33 140 IPR036770 -
Sed01g0721 459 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 49 416 IPR051681 GO:0004674(PANTHER)
Sed01g0721 459 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Sed01g0721 459 SUPERFAMILY Protein kinase-like (PK-like) 149 416 IPR011009 -
Sed01g0721 459 Pfam Protein tyrosine and serine/threonine kinase 163 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0721 459 FunFam Os01g0748600 protein 142 436 - -
Sed01g0721 459 SUPERFAMILY Ankyrin repeat 42 133 IPR036770 -
Sed01g0721 459 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Sed01g0721 459 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Sed01g0721 459 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Sed01g0721 459 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0721 Sed-Chr1:5294382 Sed08g2714 Sed-Chr8:39061769 7.80E-137 dispersed
Sed06g0316 Sed-Chr6:2840414 Sed01g0721 Sed-Chr1:5294382 5.90E-25 transposed
Sed06g0317 Sed-Chr6:2845128 Sed01g0721 Sed-Chr1:5294382 1.60E-09 transposed
Sed10g1804 Sed-Chr10:35069399 Sed01g0721 Sed-Chr1:5294382 8.70E-85 transposed
Sed01g0721 Sed-Chr1:5294382 Sed05g3258 Sed-Chr5:42063261 2.40E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78554 PF07714 PK_Tyr_Ser-Thr 2.40E-56 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0721 - - - 0.0