Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0724 ATGGGAAGAGGTAAGATTGAAATTAAACGAATCGAAAATACTACGAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTTAAAAAAGCTTATGAACTCTCCGTTCTTTGCGATGCCGAAGTTGCCCTCATCGTCTTCTCTACTCGCGGTCGTCTCTACGAATACGCCAACAATAGTGTGAGAGGAACAATTGAAAGGTACAAGAAAGCATTTGCTGACTCATCCAGTTCTGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAACAAGAAGCCTCCAAGCTGAAGAGACAGATCAGGGAAATTCAGAACTCAAACAGACATATTCTGGGAGAAGCACTTGGCTCATTGGCATTAAAGGACCTGAAGAGTTTAGAGGGCAGATTGGAGAGAGGAATCACCAAAGTTAGGGCTAAAAAGAATGAAACATTGTGTGCAGAGATGGATTTCATGCGAAAAAGGGAAATGGAGCTTCAAAACCACAACAGCTATCTAAGAGCACAGATTGCCGAACATGAAAGAATACAACAACAGCAGCAGCAACAACAACAACAGGAACAAACAAACATAATGCAAACAGCAACCTACGAGACCGTGGGAGGGCAATACGAGGAGAACCGAAGTTACGGGGCTGAGGGGCTTATGGATTCAGACACCCATTATGGCCATCAAGATCATCTCACAGCCCTTCAGCTTGTCTAG 711 43.46 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSSSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALGSLALKDLKSLEGRLERGITKVRAKKNETLCAEMDFMRKREMELQNHNSYLRAQIAEHERIQQQQQQQQQQEQTNIMQTATYETVGGQYEENRSYGAEGLMDSDTHYGHQDHLTALQLV 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5319148 5332091 + Sed0027248.1 Sed01g0724 700028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0724 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g0724 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 Coils Coil 81 108 - -
Sed01g0724 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 Gene3D - 14 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g0724 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 FunFam agamous-like MADS-box protein AGL11 13 97 - -
Sed01g0724 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed01g0724 236 Coils Coil 168 190 - -
Sed01g0724 236 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g0724 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0724 Sed-Chr1:5319148 Sed05g3263 Sed-Chr5:42093353 1.30E-98 dispersed
Sed01g0724 Sed-Chr1:5319148 Sed05g3262 Sed-Chr5:42093222 1.30E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37142 PF01486 K-box 1.50E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0724 K09264 - csv:101217987 389.808