Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0736 ATGGCAGCTTCATCAATGGCTCTGTCGTCCCCATCTCTTGCCGGCCAAGCCGTGAAATTATCTCCGGCCGCCTCCGACCTCGGCGAGGGCCGTATCTCCATGAGAAAAACTGCCGGAAAGCCCAAGCCCGTGTCCTCCGGAAGCCCATGGTACGGCCCGGACCGCGTCAAGTACTTGGGCCCATTCTCCGGCGAGGCCCCATCCTATCTCACCGGGGAATTCCCGGGCGACTACGGATGGGACACTGCCGGCCTCTCCGCCGACCCGGAGACATTCGCCAAGAACCGCGAGCTGGAAGTCATCCACTCGAGATGGGCCATGCTCGGGGCTCTTGGCTGCGTGTTCCCCGAATTACTTTCTCGCAACGGCGTCAAATTTGGTGAGGCAGTTTGGTTCAAAGCTGGGTCACAAATCTTTAGCGAGGGTGGGCTGGACTACTTGGGAAACTCAAGCCTGGTCCATGCTCAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGCTGATGGGAGCCGTTGAGGGCTACAGAATTGCGGGTGGGCCGTTGGGTGAGATCACCGACCCGATCTACCCGGGCGGGAGCTTCGACCCACTGGGGCTCGCCGACGACCCGGAGGCCTTCGCCGAGCTGAAAGTAAAGGAGCTGAAGAATGGAAGATTGGCAATGTTTTCAATGTTTGGATTCTTTGTGCAAGCCATTGTGACAGGTAAAGGGCCTTTGGAGAACTTGGCTGACCATTTGGCTGACCCAGTTAACAACAATGCTTGGGCCTTTGCAACTAACTTTGATTTGATTTTTGTTTTTGTTTTTGTTTGCCCTTCTCTTTTATCTCCTCTGAGTTTCTATTTGGCCCACTTTCCCTACTTCTTAATTGCTCCTTTTCTTCTACTTCATCTTTTTGGGGCTTTCGATTTGTTGGGTTTTTGTTCATTTTTTGACACCGTTTTGGATTGTATCCCTTCCATGCCTTTTGGGTCTCCATTTGTTGAGCTCGATTTGATTTGTTTCCCTTTCTGGGTTTCTGGAGGAAGAGGCAAATCTGGGTCTGTTTTTTTATTTCTATATGAGGTATTGTTCAGTGGATCAGATATGGCTTCTGGAAGTCCATTGAATGATCATTTATCCAAGAAGACTCCATTTTGGGGCTTGTCGTTGTGGGTTTTGATCTGCATTTGTATTGGTGCATTTATAGTGTTGATTCTTGGTTTATTATCTATGTGGATTCTTTTTCATAAAAAATCTAAAAGATCCATGGACAAATTCCCTATTTCCCAAATACCTAATTTTTCAAAAGATATCAGGATAGACCATATTGGGGCTCAAACTCCCAATGACCACCCTGAAAATAGACTTCTTTCAATTGATGTCAAAAGGAATGATGAAAATTCTGAAGTTATTACTGTGACAAAATCAAGTGAACCTGATAACAATAGCCAAGGAAGCTCCACTTATCAACATGAAAAAGCTGGCAATTCACAATCAGGGGATGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTTGAGAACGTATGGAGGATATGGAGGCATTGTGCCACCATCTCCTCTCGTTGGCTTGCCAGAAGTTTCGCATCTCGGGTGGGGTCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCTTCTGTTAATATTCTTGGAGAGGGGGGATATGGGGTTGTTTATAAGGGAAGACTCATCAATGGCACTGAGGTCGCAGTGAAAAAACTTCTCAATAATCTGGGCCAGGCAGAAAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCGGCATAAGAATCTCGTCCGACTGCTCGGATATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAGTGGCTACATGGAGCCATGTGCCAACATGGCATGTTTACTTGGGAGGCTCGTATGAAGGTGCTTCTTGGAACTGCTAAGGCGCTAGCGTATTTACACGAAGCAATTGAGCCAAAAGTTGTTCACAGGGATATAAAATCAAGCAACATATTGATTGATGACGAGTTCAATTCCAAAGTTTCTGATTTCGGATTGGCCAAACTTTTGGGCTCAGGGGAGAGCCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACGGGCTTGTTGAACGAAAAGAGTGACATTTATAGCTTCGGCGTTCTCTTGCTAGAAGCAATTACGGGGAGGGATCCTGTGGATTATGCCCGTCCTTCAAATGAGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAAAGCAGAGGAAGTTGTGGACTTGAACCTTGAGGTTAAGCCTACAACTCGTGCTTTGAAACGTGCCCTTCTTGTTGCACTTAGATGTATTGATCCAGACTCAATTAAGAGACCCAAGATGAGTCAAGTCGTAAGGATGCTCGAAGCCGACGAATTTCCACTGCATGAGGATAGAAGAAACCGAAAAAGCCGATCGATAAGCTTGGAGATGGAGGCGATGAAAGAAATGGAGACGGGTGGCGAAAGTGTTTATGTGTATTATGCGACGATGACGTTCGAGGATGGAGAAATGAAGGGAGTCATGAGTGAAAAAGTAGAAAAGAAGAAAACATGTGAATTTGTAGTAATACAAGATGATGATGATGATGAAGGGAAAGGAAGGGAAAGGAAGGGAAGGGAATGGAAGGTTGTTTGA 2736 45.98 MAASSMALSSPSLAGQAVKLSPAASDLGEGRISMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFDLIFVFVFVCPSLLSPLSFYLAHFPYFLIAPFLLLHLFGAFDLLGFCSFFDTVLDCIPSMPFGSPFVELDLICFPFWVSGGRGKSGSVFLFLYEVLFSGSDMASGSPLNDHLSKKTPFWGLSLWVLICICIGAFIVLILGLLSMWILFHKKSKRSMDKFPISQIPNFSKDIRIDHIGAQTPNDHPENRLLSIDVKRNDENSEVITVTKSSEPDNNSQGSSTYQHEKAGNSQSGDEGSSGNARKQALRTYGGYGGIVPPSPLVGLPEVSHLGWGHWFTLRDLELATNRFSSVNILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCQHGMFTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNSKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRKAEEVVDLNLEVKPTTRALKRALLVALRCIDPDSIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEMEAMKEMETGGESVYVYYATMTFEDGEMKGVMSEKVEKKKTCEFVVIQDDDDDEGKGRERKGREWKVV 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5420644 5432353 - Sed0021758.1 Sed01g0736 700040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0736 911 Pfam Chlorophyll A-B binding protein 66 233 IPR022796 -
Sed01g0736 911 SMART serkin_6 550 821 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0736 911 FunFam Putative receptor-like serine/threonine-protein kinase 626 836 - -
Sed01g0736 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0736 911 Gene3D Chlorophyll a/b binding protein domain 57 259 - -
Sed01g0736 911 FunFam Putative receptor-like protein kinase 532 625 - -
Sed01g0736 911 ProSitePatterns Protein kinases ATP-binding region signature. 556 579 IPR017441 GO:0005524(InterPro)
Sed01g0736 911 MobiDBLite consensus disorder prediction 892 911 - -
Sed01g0736 911 MobiDBLite consensus disorder prediction 467 503 - -
Sed01g0736 911 ProSiteProfiles Protein kinase domain profile. 550 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0736 911 SUPERFAMILY Chlorophyll a-b binding protein 49 262 - -
Sed01g0736 911 Coils Coil 570 590 - -
Sed01g0736 911 FunFam Chlorophyll a-b binding protein, chloroplastic 57 259 - -
Sed01g0736 911 Pfam Protein kinase domain 552 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0736 911 PANTHER OS01G0323000 PROTEIN 370 845 IPR052232 -
Sed01g0736 911 CDD STKc_IRAK 556 822 - -
Sed01g0736 911 MobiDBLite consensus disorder prediction 29 48 - -
Sed01g0736 911 Gene3D Phosphorylase Kinase; domain 1 532 625 - -
Sed01g0736 911 Gene3D Transferase(Phosphotransferase) domain 1 626 839 - -
Sed01g0736 911 SUPERFAMILY Protein kinase-like (PK-like) 534 825 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0736 Sed-Chr1:5420644 Sed04g3476 Sed-Chr4:44396275 1.50E-216 dispersed
Sed12g1956 Sed-Chr12:30606377 Sed01g0736 Sed-Chr1:5420644 7.40E-28 dispersed
Sed14g0643 Sed-Chr14:6500049 Sed01g0736 Sed-Chr1:5420644 1.60E-24 dispersed
Sed14g0644 Sed-Chr14:6510235 Sed01g0736 Sed-Chr1:5420644 1.30E-25 dispersed
Sed01g0736 Sed-Chr1:5420644 Sed04g3475 Sed-Chr4:44396275 1.50E-216 wgd
Sed01g0736 Sed-Chr1:5420644 Sed05g3277 Sed-Chr5:42172537 7.20E-251 wgd
Sed01g0736 Sed-Chr1:5420644 Sed05g1860 Sed-Chr5:32038219 4.30E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78557 PF00069 Pkinase 3.20E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0736 - - - 0.0