Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0736 | ATGGCAGCTTCATCAATGGCTCTGTCGTCCCCATCTCTTGCCGGCCAAGCCGTGAAATTATCTCCGGCCGCCTCCGACCTCGGCGAGGGCCGTATCTCCATGAGAAAAACTGCCGGAAAGCCCAAGCCCGTGTCCTCCGGAAGCCCATGGTACGGCCCGGACCGCGTCAAGTACTTGGGCCCATTCTCCGGCGAGGCCCCATCCTATCTCACCGGGGAATTCCCGGGCGACTACGGATGGGACACTGCCGGCCTCTCCGCCGACCCGGAGACATTCGCCAAGAACCGCGAGCTGGAAGTCATCCACTCGAGATGGGCCATGCTCGGGGCTCTTGGCTGCGTGTTCCCCGAATTACTTTCTCGCAACGGCGTCAAATTTGGTGAGGCAGTTTGGTTCAAAGCTGGGTCACAAATCTTTAGCGAGGGTGGGCTGGACTACTTGGGAAACTCAAGCCTGGTCCATGCTCAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGCTGATGGGAGCCGTTGAGGGCTACAGAATTGCGGGTGGGCCGTTGGGTGAGATCACCGACCCGATCTACCCGGGCGGGAGCTTCGACCCACTGGGGCTCGCCGACGACCCGGAGGCCTTCGCCGAGCTGAAAGTAAAGGAGCTGAAGAATGGAAGATTGGCAATGTTTTCAATGTTTGGATTCTTTGTGCAAGCCATTGTGACAGGTAAAGGGCCTTTGGAGAACTTGGCTGACCATTTGGCTGACCCAGTTAACAACAATGCTTGGGCCTTTGCAACTAACTTTGATTTGATTTTTGTTTTTGTTTTTGTTTGCCCTTCTCTTTTATCTCCTCTGAGTTTCTATTTGGCCCACTTTCCCTACTTCTTAATTGCTCCTTTTCTTCTACTTCATCTTTTTGGGGCTTTCGATTTGTTGGGTTTTTGTTCATTTTTTGACACCGTTTTGGATTGTATCCCTTCCATGCCTTTTGGGTCTCCATTTGTTGAGCTCGATTTGATTTGTTTCCCTTTCTGGGTTTCTGGAGGAAGAGGCAAATCTGGGTCTGTTTTTTTATTTCTATATGAGGTATTGTTCAGTGGATCAGATATGGCTTCTGGAAGTCCATTGAATGATCATTTATCCAAGAAGACTCCATTTTGGGGCTTGTCGTTGTGGGTTTTGATCTGCATTTGTATTGGTGCATTTATAGTGTTGATTCTTGGTTTATTATCTATGTGGATTCTTTTTCATAAAAAATCTAAAAGATCCATGGACAAATTCCCTATTTCCCAAATACCTAATTTTTCAAAAGATATCAGGATAGACCATATTGGGGCTCAAACTCCCAATGACCACCCTGAAAATAGACTTCTTTCAATTGATGTCAAAAGGAATGATGAAAATTCTGAAGTTATTACTGTGACAAAATCAAGTGAACCTGATAACAATAGCCAAGGAAGCTCCACTTATCAACATGAAAAAGCTGGCAATTCACAATCAGGGGATGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTTGAGAACGTATGGAGGATATGGAGGCATTGTGCCACCATCTCCTCTCGTTGGCTTGCCAGAAGTTTCGCATCTCGGGTGGGGTCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCTTCTGTTAATATTCTTGGAGAGGGGGGATATGGGGTTGTTTATAAGGGAAGACTCATCAATGGCACTGAGGTCGCAGTGAAAAAACTTCTCAATAATCTGGGCCAGGCAGAAAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCGGCATAAGAATCTCGTCCGACTGCTCGGATATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAGTGGCTACATGGAGCCATGTGCCAACATGGCATGTTTACTTGGGAGGCTCGTATGAAGGTGCTTCTTGGAACTGCTAAGGCGCTAGCGTATTTACACGAAGCAATTGAGCCAAAAGTTGTTCACAGGGATATAAAATCAAGCAACATATTGATTGATGACGAGTTCAATTCCAAAGTTTCTGATTTCGGATTGGCCAAACTTTTGGGCTCAGGGGAGAGCCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACGGGCTTGTTGAACGAAAAGAGTGACATTTATAGCTTCGGCGTTCTCTTGCTAGAAGCAATTACGGGGAGGGATCCTGTGGATTATGCCCGTCCTTCAAATGAGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAAAGCAGAGGAAGTTGTGGACTTGAACCTTGAGGTTAAGCCTACAACTCGTGCTTTGAAACGTGCCCTTCTTGTTGCACTTAGATGTATTGATCCAGACTCAATTAAGAGACCCAAGATGAGTCAAGTCGTAAGGATGCTCGAAGCCGACGAATTTCCACTGCATGAGGATAGAAGAAACCGAAAAAGCCGATCGATAAGCTTGGAGATGGAGGCGATGAAAGAAATGGAGACGGGTGGCGAAAGTGTTTATGTGTATTATGCGACGATGACGTTCGAGGATGGAGAAATGAAGGGAGTCATGAGTGAAAAAGTAGAAAAGAAGAAAACATGTGAATTTGTAGTAATACAAGATGATGATGATGATGAAGGGAAAGGAAGGGAAAGGAAGGGAAGGGAATGGAAGGTTGTTTGA | 2736 | 45.98 | MAASSMALSSPSLAGQAVKLSPAASDLGEGRISMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFDLIFVFVFVCPSLLSPLSFYLAHFPYFLIAPFLLLHLFGAFDLLGFCSFFDTVLDCIPSMPFGSPFVELDLICFPFWVSGGRGKSGSVFLFLYEVLFSGSDMASGSPLNDHLSKKTPFWGLSLWVLICICIGAFIVLILGLLSMWILFHKKSKRSMDKFPISQIPNFSKDIRIDHIGAQTPNDHPENRLLSIDVKRNDENSEVITVTKSSEPDNNSQGSSTYQHEKAGNSQSGDEGSSGNARKQALRTYGGYGGIVPPSPLVGLPEVSHLGWGHWFTLRDLELATNRFSSVNILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCQHGMFTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNSKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRKAEEVVDLNLEVKPTTRALKRALLVALRCIDPDSIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEMEAMKEMETGGESVYVYYATMTFEDGEMKGVMSEKVEKKKTCEFVVIQDDDDDEGKGRERKGREWKVV | 911 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5420644 | 5432353 | - | Sed0021758.1 | Sed01g0736 | 700040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0736 | 911 | Pfam | Chlorophyll A-B binding protein | 66 | 233 | IPR022796 | - | |
Sed01g0736 | 911 | SMART | serkin_6 | 550 | 821 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0736 | 911 | FunFam | Putative receptor-like serine/threonine-protein kinase | 626 | 836 | - | - | |
Sed01g0736 | 911 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 672 | 684 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0736 | 911 | Gene3D | Chlorophyll a/b binding protein domain | 57 | 259 | - | - | |
Sed01g0736 | 911 | FunFam | Putative receptor-like protein kinase | 532 | 625 | - | - | |
Sed01g0736 | 911 | ProSitePatterns | Protein kinases ATP-binding region signature. | 556 | 579 | IPR017441 | GO:0005524(InterPro) | |
Sed01g0736 | 911 | MobiDBLite | consensus disorder prediction | 892 | 911 | - | - | |
Sed01g0736 | 911 | MobiDBLite | consensus disorder prediction | 467 | 503 | - | - | |
Sed01g0736 | 911 | ProSiteProfiles | Protein kinase domain profile. | 550 | 814 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0736 | 911 | SUPERFAMILY | Chlorophyll a-b binding protein | 49 | 262 | - | - | |
Sed01g0736 | 911 | Coils | Coil | 570 | 590 | - | - | |
Sed01g0736 | 911 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 57 | 259 | - | - | |
Sed01g0736 | 911 | Pfam | Protein kinase domain | 552 | 819 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0736 | 911 | PANTHER | OS01G0323000 PROTEIN | 370 | 845 | IPR052232 | - | |
Sed01g0736 | 911 | CDD | STKc_IRAK | 556 | 822 | - | - | |
Sed01g0736 | 911 | MobiDBLite | consensus disorder prediction | 29 | 48 | - | - | |
Sed01g0736 | 911 | Gene3D | Phosphorylase Kinase; domain 1 | 532 | 625 | - | - | |
Sed01g0736 | 911 | Gene3D | Transferase(Phosphotransferase) domain 1 | 626 | 839 | - | - | |
Sed01g0736 | 911 | SUPERFAMILY | Protein kinase-like (PK-like) | 534 | 825 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0736 | Sed-Chr1:5420644 | Sed04g3476 | Sed-Chr4:44396275 | 1.50E-216 | dispersed | |
Sed12g1956 | Sed-Chr12:30606377 | Sed01g0736 | Sed-Chr1:5420644 | 7.40E-28 | dispersed | |
Sed14g0643 | Sed-Chr14:6500049 | Sed01g0736 | Sed-Chr1:5420644 | 1.60E-24 | dispersed | |
Sed14g0644 | Sed-Chr14:6510235 | Sed01g0736 | Sed-Chr1:5420644 | 1.30E-25 | dispersed | |
Sed01g0736 | Sed-Chr1:5420644 | Sed04g3475 | Sed-Chr4:44396275 | 1.50E-216 | wgd | |
Sed01g0736 | Sed-Chr1:5420644 | Sed05g3277 | Sed-Chr5:42172537 | 7.20E-251 | wgd | |
Sed01g0736 | Sed-Chr1:5420644 | Sed05g1860 | Sed-Chr5:32038219 | 4.30E-211 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78557 | PF00069 | Pkinase | 3.20E-48 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0736 | - | - | - | 0.0 |