Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0750 ATGAAAGAGAATGGAAGAAAACAAGGCGCTCTCTCACCATGTGCAGCTTGTAAGCTTCTTCGCCGAAGATGTGCTCAAGATTGCATTTTCGCCCCTTATTTCCCCGCCGACGAACCCCATAAGTTTGCCAGTGTTCATAAAGTCTTTGGAGCTAGTAACGTGAACAAAGTGTTACAGGAGCTACCAGAGCTTCAACGAAGCGATGCAGTGAGCTCGATGGTGTATGAGGCATACGCACGGGTGCGAGATCCAGTATATGGTTGTGTTGGAGCCATATCGTCCCTGCAACAACAGATCGATATCTTGCAAACTCAATTGACAATAGTGCAAGCAGAGGTAATACAAATGCAGATGAGGCAAACCCTGACTTCCTTTGAGCCGACTGTCGATCACTCGTCGGAAACTGCCTCGCCCTCCGACAAGATGAACAGTCCGGCCCAAAACAAGTCCTACTTGTCCATGGATATGGGGGAGTCATTGTGGTCATGCTAG 492 48.58 MKENGRKQGALSPCAACKLLRRRCAQDCIFAPYFPADEPHKFASVHKVFGASNVNKVLQELPELQRSDAVSSMVYEAYARVRDPVYGCVGAISSLQQQIDILQTQLTIVQAEVIQMQMRQTLTSFEPTVDHSSETASPSDKMNSPAQNKSYLSMDMGESLWSC 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5548781 5554190 + Sed0009084.1 Sed01g0750 700054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0750 163 Coils Coil 92 112 - -
Sed01g0750 163 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Sed01g0750 163 MobiDBLite consensus disorder prediction 126 149 - -
Sed01g0750 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 143 - -
Sed01g0750 163 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0750 Sed-Chr1:5548781 Sed01g1931 Sed-Chr1:14379149 1.50E-42 dispersed
Sed01g0750 Sed-Chr1:5548781 Sed05g3295 Sed-Chr5:42296810 8.30E-65 wgd
Sed01g0750 Sed-Chr1:5548781 Sed05g1854 Sed-Chr5:31967644 6.40E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37147 PF03195 LOB 7.80E-42 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0750 - - - 0.0