Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0755 ATGCCTATGGCGGCCGTCCCCTTGAACAAAATCGAGCGAGCCCACCAGATGTATCGCGATGGGCTCTATGTTGAAGCTCTCAGATTCTACACGGAAGCGCTTTCCATGGCGAAAACAAGGTCCCAGAGGATTGCGCTCCATAGTAACAGGGCTGCTTGTCACTTGAAACTTCATGATTTTAAGAAGGCTGCAGAAGAATGTACTTGGGTTCTTGAACTTGATCATAATCACACTGGAGCACTAATGCTCCGAGCCCAAACTCTTGTCACACTCAAGGAATACCATTCAGCTCTGTTTGATGTTAATAGACTTATAGAACTGAACCCATCATCAGAAGTTTATCAAAATCTTCATACTCGTCTCAAGACTCAATTGTCACTTGCTACAATACCTGAGTCAGAAGCAGAGCTAGAGGAGGAGGAGGAGGAAGAAGAATATGATGTCGAGTTCAATACTAATGCATCCAATGAGAAGTGCATTGAGGGAAAAGAAAATGTTGTAACTCCAAGTATTGATCAAGTACAGAAACCTGAGCTCAATTGCAAATTGACCCAAAATACGGTTATCCCGACAACTCAGGGCAATGGTGGATTATCTGCAGAAGGTGGCAATCAGAAACCTGAGGTAAAAATGACTGCTAAAAGTGAAGTTGTTGCCCCTCAAGTACAGATCAAGAAGGGCACAAGTACAATTGCCCTAGATCCCAAGGGGTGGCAAACAATCCCAAAGCCAAAAGGACACTCAACTTTAGACTATGCACGTTGGGATAGTGTTGAGGATGATTCTAGTGAAGATGATGATGATGAAGAAGAGTCTGGACCTCAATTTCGTTTTCGTGTCAAAACTGTTGGCGTAAAGTCTGTGAAATGA 870 43.45 MPMAAVPLNKIERAHQMYRDGLYVEALRFYTEALSMAKTRSQRIALHSNRAACHLKLHDFKKAAEECTWVLELDHNHTGALMLRAQTLVTLKEYHSALFDVNRLIELNPSSEVYQNLHTRLKTQLSLATIPESEAELEEEEEEEEYDVEFNTNASNEKCIEGKENVVTPSIDQVQKPELNCKLTQNTVIPTTQGNGGLSAEGGNQKPEVKMTAKSEVVAPQVQIKKGTSTIALDPKGWQTIPKPKGHSTLDYARWDSVEDDSSEDDDDEEESGPQFRFRVKTVGVKSVK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5575958 5579904 - Sed0018431.1 Sed01g0755 700059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0755 289 SMART tpr_5 78 111 IPR019734 GO:0005515(InterPro)
Sed01g0755 289 SMART tpr_5 44 77 IPR019734 GO:0005515(InterPro)
Sed01g0755 289 MobiDBLite consensus disorder prediction 235 278 - -
Sed01g0755 289 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 289 - -
Sed01g0755 289 Gene3D Tetratricopeptide repeat domain 4 134 IPR011990 GO:0005515(InterPro)
Sed01g0755 289 SUPERFAMILY TPR-like 11 121 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0755 Sed-Chr1:5575958 Sed05g3299 Sed-Chr5:42338237 1.10E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0755 - - - 0.0