Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0755 ATGCCTATGGCGGCCGTCCCCTTGAACAAAATCGAGCGAGCCCACCAGATGTATCGCGATGGGCTCTATGTTGAAGCTCTCAGATTCTACACGGAAGCGCTTTCCATGGCGAAAACAAGGTCCCAGAGGATTGCGCTCCATAGTAACAGGGCTGCTTGTCACTTGAAACTTCATGATTTTAAGAAGGCTGCAGAAGAATGTACTTGGGTTCTTGAACTTGATCATAATCACACTGGAGCACTAATGCTCCGAGCCCAAACTCTTGTCACACTCAAGGAATACCATTCAGCTCTGTTTGATGTTAATAGACTTATAGAACTGAACCCATCATCAGAAGTTTATCAAAATCTTCATACTCGTCTCAAGACTCAATTGTCACTTGCTACAATACCTGAGTCAGAAGCAGAGCTAGAGGAGGAGGAGGAGGAAGAAGAATATGATGTCGAGTTCAATACTAATGCATCCAATGAGAAGTGCATTGAGGGAAAAGAAAATGTTGTAACTCCAAGTATTGATCAAGTACAGAAACCTGAGCTCAATTGCAAATTGACCCAAAATACGGTTATCCCGACAACTCAGGGCAATGGTGGATTATCTGCAGAAGGTGGCAATCAGAAACCTGAGGTAAAAATGACTGCTAAAAGTGAAGTTGTTGCCCCTCAAGTACAGATCAAGAAGGGCACAAGTACAATTGCCCTAGATCCCAAGGGGTGGCAAACAATCCCAAAGCCAAAAGGACACTCAACTTTAGACTATGCACGTTGGGATAGTGTTGAGGATGATTCTAGTGAAGATGATGATGATGAAGAAGAGTCTGGACCTCAATTTCGTTTTCGTGTCAAAACTGTTGGCGTAAAGTCTGTGAAATGA 870 43.45 MPMAAVPLNKIERAHQMYRDGLYVEALRFYTEALSMAKTRSQRIALHSNRAACHLKLHDFKKAAEECTWVLELDHNHTGALMLRAQTLVTLKEYHSALFDVNRLIELNPSSEVYQNLHTRLKTQLSLATIPESEAELEEEEEEEEYDVEFNTNASNEKCIEGKENVVTPSIDQVQKPELNCKLTQNTVIPTTQGNGGLSAEGGNQKPEVKMTAKSEVVAPQVQIKKGTSTIALDPKGWQTIPKPKGHSTLDYARWDSVEDDSSEDDDDEEESGPQFRFRVKTVGVKSVK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5575958 5579904 - Sed0018431.1 Sed01g0755 700059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0755 289 SMART tpr_5 78 111 IPR019734 GO:0005515(InterPro)
Sed01g0755 289 SMART tpr_5 44 77 IPR019734 GO:0005515(InterPro)
Sed01g0755 289 MobiDBLite consensus disorder prediction 235 278 - -
Sed01g0755 289 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 289 - -
Sed01g0755 289 Gene3D Tetratricopeptide repeat domain 4 134 IPR011990 GO:0005515(InterPro)
Sed01g0755 289 SUPERFAMILY TPR-like 11 121 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0755 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0755 Sed-Chr1:5575958 Sed05g3299 Sed-Chr5:42338237 1.10E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1088 . . . . Bpe07g00463 . . . . . . . . . . . Cpe16g00716 . . . . . . . Cla02g01818 Cam02g1924 Cec02g1950 Cco02g1990 Clacu02g1905 Cmu02g1853 Cre02g2168 . . . . . . . Cme11g01602 Blo15g00613 . . . . . . Bma12g00591 Sed01g0755 . . . . . . . . Bhi10g00956 Tan05g0601 Cmetu11g1730 . Hepe08g0634 . . . . . . . . . . Csa06g01163 Chy11g01028 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010489 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 0 1 2 1 1 32