Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0768 ATGAGTTTGGACACCGCGTCTACCTCCGGAGCTCCGGGATCGAACGATTCATCAACTAATAGAAGGAATTCAAAGCGACCCAAATATTCAAGGTTTACCCAGCAGGAGCTTCCAGCGTGTAAACCTATTCTCACACCAATATGGGTGATTTCGGCATTCATGTTAGTTTGCATTATCTTTGTTCCCATTGGGGTTGCATCCTTGCTTGCTTCCAGAGATGTTGTTGAAATAATTGACCAATATGAAACGGAGTGCATACCAGAAAATTTTAGAAATGACAAGGTTGGGTTCATACAGGGCCCTGCAAGTAAAAATTGCAGCAGAAAAATAACTGTGCCGAAACGGATGCAGCAACCAATATATGTCTATTACCAGCTTGATAATTTCTATCAGAATCACCGCAGATACGTGCAGAGCCGTAGTGATAAGCAATTGAGAGATGCTGGCAGCGAGCATGATACAGGCTCTTGCAAGCCTGAAGGCAAGGTGAACGGGCAGCCAATCGTTCCATGTGGTTTAATAGCTTGGAGTATGTTTAATGATACGTATAACTTTGTCCTTAACAACAAACAAGTTGCTGTGAACAAGCAAGGTATCTCATGGAAGAGCGATCGCGAACACAAATTCGGCAAGAACGTATTTCCCAAAAATTTCCAGAAAGGTGCTCTGAAAGGTGGGAAAACCCTTGATGAAACCATACCATTGAGTCAACAAGAGGATCTTATTGTGTGGATGCGAACCGCTGCTCTTCCCTCATTTAGAAAATTGTACGGAAAGATAGAGGTCGACCTTGAGAAGGATGATGTTATAGTTGTGAATTTGGAGAACAATTACAACACATTCAGTTTTAACGGCAAGAAAAAGCTTGTGCTTTCTACAACTAGCTGGCTTGGTGGGAAGAATGACTTTCTTGGCATTGCTTATCTTATTGTTGGTGGGTTTTGCTTCCTTTTGGCGATGACTTTCACGGTCGTCTATCTTGTTAAGCCAAGGCGACTTGGGGACCCATCCTATCTATCGTGGAATCGAGACCCAAGTGGTCAGTGA 1047 43.17 MSLDTASTSGAPGSNDSSTNRRNSKRPKYSRFTQQELPACKPILTPIWVISAFMLVCIIFVPIGVASLLASRDVVEIIDQYETECIPENFRNDKVGFIQGPASKNCSRKITVPKRMQQPIYVYYQLDNFYQNHRRYVQSRSDKQLRDAGSEHDTGSCKPEGKVNGQPIVPCGLIAWSMFNDTYNFVLNNKQVAVNKQGISWKSDREHKFGKNVFPKNFQKGALKGGKTLDETIPLSQQEDLIVWMRTAALPSFRKLYGKIEVDLEKDDVIVVNLENNYNTFSFNGKKKLVLSTTSWLGGKNDFLGIAYLIVGGFCFLLAMTFTVVYLVKPRRLGDPSYLSWNRDPSGQ 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5721913 5726284 - Sed0000958.1 Sed01g0768 700072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0768 348 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 68 332 IPR005045 GO:0016020(InterPro)
Sed01g0768 348 MobiDBLite consensus disorder prediction 141 158 - -
Sed01g0768 348 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g0768 348 PIRSF Lem3/Cdc50 1 344 IPR005045 GO:0016020(InterPro)
Sed01g0768 348 PANTHER CELL CYCLE CONTROL PROTEIN 50 18 340 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Sed01g0768 348 MobiDBLite consensus disorder prediction 141 161 - -
Sed01g0768 348 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0768 Sed-Chr1:5721913 Sed05g2740 Sed-Chr5:38790625 5.20E-133 dispersed
Sed01g0768 Sed-Chr1:5721913 Sed05g3312 Sed-Chr5:42462075 1.80E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0768 K26935 - csv:101216400 606.29