Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0769 ATGTTCCATGCCACCAAGAAGCCCTCCTCTATGACTTCCCATGACAGGCCAATGTGTATCCAAGGAGACTCGGGTCTCGTCCTCACTACCGACCCCAAACCCCGCCTCCGCTGGACTGTCGAGCTCCACGAGCGCTTTGTCGACGCCGTCACTCAGCTTGGGGGACCCGACAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCTTAACCCTCTACCATCTCAAGAGCCATCTTCAGAAATTCAGGCTGGGAAAGCAACCCCACAAGGAATTCAATGAACAATCAATAAAGGATGGTTTGAGAGCTTCAGCCTTAGAAAGAAACAGTGGATCTTCTTCCAGCTTAATGGATCGTAGCATGAACGAGATGCAAATGGAAGTCCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTCCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCAGGAGAGAACATGTCCGCCGCCACTTCCGCCGCCGCCGCCGGACCTTTCAAAACCACTTCCAACAATATTGGAACAACCACCACAGCCATCAAAGACTTCATTTCACCTCCTCCTCCTCACACCTTCCCTCCTTTTCAAGATATCAACAACCTATTTACCTGCGAACCGCTGCTCCCGCCTCCCGTCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCCGGTGCCGGCAAGGCCCCTATTTTCTGGCCAGACGATCTTCGGCTCCAGGACTTAGGGACCCCTCCAGCCACACGAGCACCAACACCGCCATTGATAGAATTTGACCCTCTTCAATTGGAAATGTATGGAACTAGGTCACCGCTGCTCGCCATTCGCAATGATGAGAAGAAGTTCGATGTGTCGTTAAAGCTCGAGAGGCCATCACCACGACATTCGGATGAGAGGGTGAATTGTGATATGGCTAACAATAACAACCCTAAGATGTCACAGCCACAGGGAAGAAATAATTCTTCATTTGGTTAA 1026 50.97 MFHATKKPSSMTSHDRPMCIQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDGLRASALERNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMSAATSAAAAGPFKTTSNNIGTTTTAIKDFISPPPPHTFPPFQDINNLFTCEPLLPPPVDCLKKPSPFISGAGKAPIFWPDDLRLQDLGTPPATRAPTPPLIEFDPLQLEMYGTRSPLLAIRNDEKKFDVSLKLERPSPRHSDERVNCDMANNNNPKMSQPQGRNNSSFG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5741349 5744658 + Sed0015076.1 Sed01g0769 700073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0769 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Sed01g0769 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Sed01g0769 341 MobiDBLite consensus disorder prediction 305 341 - -
Sed01g0769 341 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Sed01g0769 341 MobiDBLite consensus disorder prediction 1 17 - -
Sed01g0769 341 MobiDBLite consensus disorder prediction 319 341 - -
Sed01g0769 341 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Sed01g0769 341 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g0769 341 FunFam Myb family transcription factor 32 90 - -
Sed01g0769 341 Gene3D - 32 90 - -
Sed01g0769 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 190 IPR046955 GO:0003700(InterPro)
Sed01g0769 341 Pfam MYB-CC type transfactor, LHEQLE motif 127 166 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0769 Sed-Chr1:5741349 Sed05g3315 Sed-Chr5:42487955 8.80E-93 dispersed
Sed01g0769 Sed-Chr1:5741349 Sed01g0770 Sed-Chr1:5741691 1.90E-143 tandem
Sed01g0769 Sed-Chr1:5741349 Sed05g3314 Sed-Chr5:42487955 5.60E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37150 PF00249 Myb_DNA-binding 1.80E-06 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0769 - - - 0.0