Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0775 ATGAGGTTAATGGCAATGGCTTCTTTTGCCCTCTTTTCCCTCTTCCATCTTCTTCCCTTGATCACGGCGGCATCGGTCAATCAACCTGGGTCCGCTCCGTTTTCGACGAGTCACCGTGCGCCGCCACCACCGACAGCATCGATCAACCAACCTGGGTCTGCTCCGTTTTCGACGAGGCCCCGTGCACCGCCACCACCGGCCGCTTTGTTGTCTCACTCGTTTTACCTTCGGACATGTCCAGATGTTGAGGGCATCATCCATCGGAGAGTACAAGCTTGGATTACCAAAGACTCCACGATGGCTCCTGCCCTCATTCGTTTGCATTTTCATGACTGTGCTGTTAGGGGATGCGATGCATCGATTTTACTAAACTATCGAAGAACCGAAAGGCAAGCCTACGTCAGCAAAACGCTACGTGGATTCCGAGTGATCGACGACATCAAGGCGGAGCTCGAGAGAAAATGCCCTAAAACCGTCTCCTGCTCCGACATCCTCACCGCCGCCGCCAGAGACGCCACCATCCTCACCGGCGGCCCATTCTGGGAGGTTCCATTCGGCCGCCGTGACGGCAGAATCTCCATCGCCGCCGAAGCCGATCGCGTCCCTCAGGGCCACGAAAACGTCACCGCTCTCATCAACTACTTCCGAACCCTAAGGCTCGACGTCCTCGACCTCGTCGCCCTCTCCGGCGCCCACACCGTCGGCCGCGCCGCCTGCCACAGCTTCCAAGACCGCCTCTACAACTTCAACCGGACCCGAAAACCCGACCCGATCCTCAAACCTCCGTTCCTGAAGATGCTTCGAAGGCAGTGCAAGAAGGATGCGGATCTCGTGTTCTTCGATTCGACCACTCCGAAAATGTTCGACACTGCTTACTTCACGAATCTTCAGAAGAAATTAGGGCTTCTTTCGACGGATCAGGCGCTGTATTCGGATGAACGAACGTCTTCGTTTGTGGATCTGATGGCGAATCAGCCGTTCCTTTTCGAGAGCCAATTCGCGGCGTCGATGGTGAAATTGGGGAATGTGGGAGTTCTGGCGAAGAAGAACGAAGGCGAAATTCGAGTTAATTGCAATTTCGTTAACCCTAGAAGGAAGTGA 1101 55.04 MRLMAMASFALFSLFHLLPLITAASVNQPGSAPFSTSHRAPPPPTASINQPGSAPFSTRPRAPPPPAALLSHSFYLRTCPDVEGIIHRRVQAWITKDSTMAPALIRLHFHDCAVRGCDASILLNYRRTERQAYVSKTLRGFRVIDDIKAELERKCPKTVSCSDILTAAARDATILTGGPFWEVPFGRRDGRISIAAEADRVPQGHENVTALINYFRTLRLDVLDLVALSGAHTVGRAACHSFQDRLYNFNRTRKPDPILKPPFLKMLRRQCKKDADLVFFDSTTPKMFDTAYFTNLQKKLGLLSTDQALYSDERTSSFVDLMANQPFLFESQFAASMVKLGNVGVLAKKNEGEIRVNCNFVNPRRK 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5786803 5789108 - Sed0013759.1 Sed01g0775 700079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0775 366 FunFam Peroxidase 73 213 - -
Sed01g0775 366 Pfam Peroxidase 88 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 CDD secretory_peroxidase 70 361 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g0775 366 Gene3D Peroxidase, domain 2 202 340 - -
Sed01g0775 366 PRINTS Plant peroxidase signature 158 168 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 223 235 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 335 348 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 103 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 177 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 79 98 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 295 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 139 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Plant peroxidase signature 279 294 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 FunFam Peroxidase 202 340 - -
Sed01g0775 366 PRINTS Haem peroxidase superfamily signature 101 115 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Haem peroxidase superfamily signature 177 189 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Haem peroxidase superfamily signature 224 239 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Haem peroxidase superfamily signature 159 176 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PRINTS Haem peroxidase superfamily signature 281 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 SUPERFAMILY Heme-dependent peroxidases 70 363 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 ProSiteProfiles Plant heme peroxidase family profile. 69 362 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 PANTHER - 68 362 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0775 366 MobiDBLite consensus disorder prediction 31 63 - -
Sed01g0775 366 ProSitePatterns Peroxidases proximal heme-ligand signature. 224 234 IPR019793 -
Sed01g0775 366 ProSitePatterns Peroxidases active site signature. 101 112 IPR019794 GO:0004601(InterPro)
Sed01g0775 366 Gene3D - 73 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0775 Sed-Chr1:5786803 Sed01g1534 Sed-Chr1:11094649 4.50E-103 dispersed
Sed01g0775 Sed-Chr1:5786803 Sed10g0374 Sed-Chr10:2256507 1.40E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0775 K00430 - csv:101204209 535.798