Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0777 ATGTGGAATACTTTTAATTTCTTAATCCTTCACCTCCTCATTGTCCTCTCCGTTAGCCTCGTGGCGAACGAGGTTAACGCAGGGGGACAAGAGAAGGTGAGGCTGAATATGATGCATCGCCACCATCCAAAGATAGTGGAAAGGCTCAAAATCAATATGAACGCGGAAGACATGAACGATCGTGTGAAGGACATTCACATGCACGACAGTAGTAGGCACCGCATGCTCACGGCGTTGCGGGTTCGGCAGTTAGTTGAGACGAGAGTGCAAGGATTATCGACTACGGAGCTGCCAGCACCGTTGGCGACGGGGATAGGGCTGAAGATGTTCTCTGGTGCGGACTACGGAAGCAGCGAGTATTTCGTGGAGATGAAAATCGGAACGCCGCCGCAGAAACACATGTTGATCGTCGACACGGGAAGTGATCTGTTGTGGGTCAAATGTAGGTACAGGCGCTGCATAGGAGCAAATTGCAACCATGGGAATGCGATTCATAAGAGCCGCAATGATCAAAGAGAGAAAATGGGCCGTGTGTTCTATGCTAATCGTTCATCTTCTTTTGTGGCCGTACCCTGCAGTTCAAACGAGTGTTCGGATGAATTTACACATTTCTTCGTCTTGCGTGATTGCAAAGTTCCAACCGACCCTTGTCGCTATGATTACAGCTATGCAGGCGGATCAAGTGCAAGGGGGCTATTTGCAGTGGAAACATTAACGGTAAACTTAACCGACGGAACAGAGAAACAACTGAACGACAGTGTAATCGGGTGCACAGAATCAGCGTCCGGCAAAGTTTTTAAGGGAGCGGACGGGGTGGTTGGATTAGGTGCAAACGTGTTCTCGTTCACCTACAAAGCCGGCCAAAACTTCCAAGGCGGTGGCTTTACGTACTGCCTCGTCGACCACCTCAGCAACCGCCTCGCAACCAGCTACTTCATCCTCGGCCCCCCGTCTCCCGCCACACGCACCGCCGCCACCACCACCGCTGTCACCGGCGCCACCACCAAGACCGCACTCCTCGCTAGCGACATGTTTCGGGGGCTCTACGGCATGGGCCTCAACGGAATCTCGGTCGACGGCACCATCCTCGACATCCCGCCTCGCGTCTGGGACACCAACAGCAGCGGCGGCACCATCATCGACACCGGCACCAGCTTGACGATGCTGACGATGCCAGCCTACGAAATGGTGTCGGAAGCTTTTCTTTCCAAATTCTCAAACCTCCCCAGGTTGAGTTTCGATCCATTTGATATCTGCTTCAATAACACCATGTACCACAACTCCATGGCCCCGAAGCTGCGGCTCCATTTCAGCGACGGCGCCGTGTTCCAGCCGCCATCCAAGAGCTACATCCTCCCCATTGCCGGGGACACTAGTTGTTTAGGGATAGTTCCGGTGCCTTTTCCGGGCACCAATGTCATTGGGAATATTCTCCAACAAAATTATCTCTGGCAATTTGATTTCAATAAAAATACCGTCACTTTTACTCCCTCTGAATGCGTCTAG 1506 52.32 MWNTFNFLILHLLIVLSVSLVANEVNAGGQEKVRLNMMHRHHPKIVERLKINMNAEDMNDRVKDIHMHDSSRHRMLTALRVRQLVETRVQGLSTTELPAPLATGIGLKMFSGADYGSSEYFVEMKIGTPPQKHMLIVDTGSDLLWVKCRYRRCIGANCNHGNAIHKSRNDQREKMGRVFYANRSSSFVAVPCSSNECSDEFTHFFVLRDCKVPTDPCRYDYSYAGGSSARGLFAVETLTVNLTDGTEKQLNDSVIGCTESASGKVFKGADGVVGLGANVFSFTYKAGQNFQGGGFTYCLVDHLSNRLATSYFILGPPSPATRTAATTTAVTGATTKTALLASDMFRGLYGMGLNGISVDGTILDIPPRVWDTNSSGGTIIDTGTSLTMLTMPAYEMVSEAFLSKFSNLPRLSFDPFDICFNNTMYHNSMAPKLRLHFSDGAVFQPPSKSYILPIAGDTSCLGIVPVPFPGTNVIGNILQQNYLWQFDFNKNTVTFTPSECV 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5804527 5807193 - Sed0012612.1 Sed01g0777 700081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0777 501 PANTHER OS07G0603500 PROTEIN-RELATED 21 497 IPR051708 -
Sed01g0777 501 FunFam Aspartyl protease family protein 331 501 - -
Sed01g0777 501 Pfam Xylanase inhibitor C-terminal 349 496 IPR032799 -
Sed01g0777 501 SUPERFAMILY Acid proteases 112 500 IPR021109 -
Sed01g0777 501 ProSiteProfiles Peptidase family A1 domain profile. 120 496 IPR033121 -
Sed01g0777 501 Gene3D Acid Proteases 319 501 IPR021109 -
Sed01g0777 501 Gene3D Acid Proteases 107 315 IPR021109 -
Sed01g0777 501 Pfam Xylanase inhibitor N-terminal 120 315 IPR032861 -
Sed01g0777 501 CDD pepsin_A_like_plant 119 500 IPR034161 -
Sed01g0777 501 PRINTS Pepsin (A1) aspartic protease family signature 472 487 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g0777 501 PRINTS Pepsin (A1) aspartic protease family signature 126 146 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g0777 501 PRINTS Pepsin (A1) aspartic protease family signature 378 389 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g0777 501 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 135 146 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0777 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0777 Sed-Chr1:5804527 Sed11g1581 Sed-Chr11:31317098 1.30E-52 dispersed
Sed01g0777 Sed-Chr1:5804527 Sed07g2372 Sed-Chr7:39575854 5.00E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34