Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0777 ATGTGGAATACTTTTAATTTCTTAATCCTTCACCTCCTCATTGTCCTCTCCGTTAGCCTCGTGGCGAACGAGGTTAACGCAGGGGGACAAGAGAAGGTGAGGCTGAATATGATGCATCGCCACCATCCAAAGATAGTGGAAAGGCTCAAAATCAATATGAACGCGGAAGACATGAACGATCGTGTGAAGGACATTCACATGCACGACAGTAGTAGGCACCGCATGCTCACGGCGTTGCGGGTTCGGCAGTTAGTTGAGACGAGAGTGCAAGGATTATCGACTACGGAGCTGCCAGCACCGTTGGCGACGGGGATAGGGCTGAAGATGTTCTCTGGTGCGGACTACGGAAGCAGCGAGTATTTCGTGGAGATGAAAATCGGAACGCCGCCGCAGAAACACATGTTGATCGTCGACACGGGAAGTGATCTGTTGTGGGTCAAATGTAGGTACAGGCGCTGCATAGGAGCAAATTGCAACCATGGGAATGCGATTCATAAGAGCCGCAATGATCAAAGAGAGAAAATGGGCCGTGTGTTCTATGCTAATCGTTCATCTTCTTTTGTGGCCGTACCCTGCAGTTCAAACGAGTGTTCGGATGAATTTACACATTTCTTCGTCTTGCGTGATTGCAAAGTTCCAACCGACCCTTGTCGCTATGATTACAGCTATGCAGGCGGATCAAGTGCAAGGGGGCTATTTGCAGTGGAAACATTAACGGTAAACTTAACCGACGGAACAGAGAAACAACTGAACGACAGTGTAATCGGGTGCACAGAATCAGCGTCCGGCAAAGTTTTTAAGGGAGCGGACGGGGTGGTTGGATTAGGTGCAAACGTGTTCTCGTTCACCTACAAAGCCGGCCAAAACTTCCAAGGCGGTGGCTTTACGTACTGCCTCGTCGACCACCTCAGCAACCGCCTCGCAACCAGCTACTTCATCCTCGGCCCCCCGTCTCCCGCCACACGCACCGCCGCCACCACCACCGCTGTCACCGGCGCCACCACCAAGACCGCACTCCTCGCTAGCGACATGTTTCGGGGGCTCTACGGCATGGGCCTCAACGGAATCTCGGTCGACGGCACCATCCTCGACATCCCGCCTCGCGTCTGGGACACCAACAGCAGCGGCGGCACCATCATCGACACCGGCACCAGCTTGACGATGCTGACGATGCCAGCCTACGAAATGGTGTCGGAAGCTTTTCTTTCCAAATTCTCAAACCTCCCCAGGTTGAGTTTCGATCCATTTGATATCTGCTTCAATAACACCATGTACCACAACTCCATGGCCCCGAAGCTGCGGCTCCATTTCAGCGACGGCGCCGTGTTCCAGCCGCCATCCAAGAGCTACATCCTCCCCATTGCCGGGGACACTAGTTGTTTAGGGATAGTTCCGGTGCCTTTTCCGGGCACCAATGTCATTGGGAATATTCTCCAACAAAATTATCTCTGGCAATTTGATTTCAATAAAAATACCGTCACTTTTACTCCCTCTGAATGCGTCTAG 1506 52.32 MWNTFNFLILHLLIVLSVSLVANEVNAGGQEKVRLNMMHRHHPKIVERLKINMNAEDMNDRVKDIHMHDSSRHRMLTALRVRQLVETRVQGLSTTELPAPLATGIGLKMFSGADYGSSEYFVEMKIGTPPQKHMLIVDTGSDLLWVKCRYRRCIGANCNHGNAIHKSRNDQREKMGRVFYANRSSSFVAVPCSSNECSDEFTHFFVLRDCKVPTDPCRYDYSYAGGSSARGLFAVETLTVNLTDGTEKQLNDSVIGCTESASGKVFKGADGVVGLGANVFSFTYKAGQNFQGGGFTYCLVDHLSNRLATSYFILGPPSPATRTAATTTAVTGATTKTALLASDMFRGLYGMGLNGISVDGTILDIPPRVWDTNSSGGTIIDTGTSLTMLTMPAYEMVSEAFLSKFSNLPRLSFDPFDICFNNTMYHNSMAPKLRLHFSDGAVFQPPSKSYILPIAGDTSCLGIVPVPFPGTNVIGNILQQNYLWQFDFNKNTVTFTPSECV 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5804527 5807193 - Sed0012612.1 Sed01g0777 700081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0777 501 PANTHER OS07G0603500 PROTEIN-RELATED 21 497 IPR051708 -
Sed01g0777 501 FunFam Aspartyl protease family protein 331 501 - -
Sed01g0777 501 Pfam Xylanase inhibitor C-terminal 349 496 IPR032799 -
Sed01g0777 501 SUPERFAMILY Acid proteases 112 500 IPR021109 -
Sed01g0777 501 ProSiteProfiles Peptidase family A1 domain profile. 120 496 IPR033121 -
Sed01g0777 501 Gene3D Acid Proteases 319 501 IPR021109 -
Sed01g0777 501 Gene3D Acid Proteases 107 315 IPR021109 -
Sed01g0777 501 Pfam Xylanase inhibitor N-terminal 120 315 IPR032861 -
Sed01g0777 501 CDD pepsin_A_like_plant 119 500 IPR034161 -
Sed01g0777 501 PRINTS Pepsin (A1) aspartic protease family signature 472 487 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g0777 501 PRINTS Pepsin (A1) aspartic protease family signature 126 146 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g0777 501 PRINTS Pepsin (A1) aspartic protease family signature 378 389 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g0777 501 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 135 146 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0777 Sed-Chr1:5804527 Sed11g1581 Sed-Chr11:31317098 1.30E-52 dispersed
Sed01g0777 Sed-Chr1:5804527 Sed07g2372 Sed-Chr7:39575854 5.00E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0777 - - - 0.0