Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0791 ATGAATAGGATAAGCGATACAAATTTGCCCACTATCAATTTGGAAGATAATATTGAGTCTACTATCCGTACTCAATTTGATGAAGTTGAAGATTATAATATCGAGCCTCTTATTAATATTCAAAAGGAGATTGTTGAGCCAAGAGTTGGGATGGAGTTTAGTTCTATTGAGGATGCATACCAATTCTATGTCAATTATGGAGTAAAAGTTGGGTTTAATGTAAGGAAAAAATATCACAAAAAGAAAAAAAATGGAGTTGTTTCAAGAGTAACCTTTTGTTGCTCTAAAGAAGGATTTCGTCAAGTAGATAGACGAAAAGAAAGTGTTTTATACACTCGACCAGTTTCAAGGATCGGATGTAGAGCCGATATAGCTTGCTTGCTTGGAAAGGATAGTAAATACAAAGTAGTGTCTTTTAATGGAAACCACAATCACGAACTTGTTAGAACACCATCAAAGCATATTTTGAAAGCCATTGGGAGCATTTCAAGTGCCCAAAAGACTTCAGTAAAAAATGCTCAAGAACTGGAAATTTCAGCTAATGCAACTATGGAACCAATGAGTAAGGAAGTAGGTGATAAAGAACATTTGGGAATATTGGATAAGATTCACAACAGTCATATACACAAAGAGGACAAATCAAGAATCGAGAAAGGAGAAGCTAGAGTTTTGTTGCAGTACTTTCAGAAAAGACAAATGGAGAGCTATTCATTTTTTTATGCATTGCAACTTGATGAAGATGACATGATCACCAACATTTTCTGGACAGATGTGCGCTCTATTTGTGATTATAGGCTATTTGGCGATGTTCTTTGTTTTGACACTACTTGTCGAATAAAAGAGCATGCTCGGCCGTTTGTCACATTTATTGGAGTGAATCATCATAAACAATCGGTGGTTTTTGGTGCTGCCTTACTTTATGATGAAACTATAGAATCTTTTAAATGGTTGTTTGAAACATTTCTTGGTGCAATGTCAGGAAAACAACCAAAGACAATTCTTACGGATCATTCTGTAGCAATGGCTAAAGCAATAAGTGATGTTTTTCCTGAAACCCAACATCGACTATGTGTTTGGCATATTTTTCAAAATGCGACTAAAAACTTAAGTCATGTGTTCGATAGTTCAAATCAATTTGCTCATGACTTTAGTCGTTGCTTGTATGATTATGAATGTGAAGATGATTGGTTGCTAGCATGGCAACAAATGTTGGACATTTATAATCTTAATGATAATCAGTGGTTGGCAGATTTGTTTGAATTGCGAGAAAAATGGTCGATGGTATATGGACGACATACTTTTACAGCTGTTATGAAAAGTACAAAGCGAAGTGAAAGTACGGATAATTTATTGAAAAAATACTTAAAACCAAGATATGACATCTTACATTTCCTTGAACATTATGAAAAGGTTTTAGCAGATCGAAGGTATGAAGAGTTGATTGCAGATTTCAAGATGAATCAAACAACACCGGTTTTGCTAAGAAATACAGGGATGCTACAACATGCAGCTGAAGTATATACACCGATAATGTTTAAATTGTTTCAAAAAGAGTACGTGGACATTCTAATGTGTAACATCTACAAAGTTGGGAAGTTGGATGCCACAACAGAATATAAAGTATCATGTTTTGGAAGATCTCACCAATGGATGGTTAAGTATGAAGCTTTAACACAAACAATCACATGTAGTTGCATGAAATTCACTTTTATGGGCATTTTATGTACTCATGCGCTTAAGGTTCTTGAGAAGAAAAATGTGAACAGAATTCCTACTTCATATATTTTAAAAAGGTGGACAAAAGAGGCTAGAGCTACGAGTGGTTTTGAGAATCAAATGCATGAGGTAAGTGAAAATCTTAAAGAATCATTTGGAAAGCGTTACAACCACTTATGTTGTAATGCTTGTCAAATTACTTCACTAGCAGTAGAACATGAGAAGTTGTTTGAGTATACGGCACAAAAATTTAATCTATTGCTCAAAGATTTGGAGAATATGAAAAAAAATATTTTAGTGGAAAGTAATCAAGTAGAAGATTCATGTTTGATCGGAGATAATCTAGAAGGACATGGAGTTAAAAGGAAGTCTACATTTGGTAGTCCTCACAATCAATTGAATGATCCGCTTGAAAAAAGAAGATAG 2142 34.36 MNRISDTNLPTINLEDNIESTIRTQFDEVEDYNIEPLINIQKEIVEPRVGMEFSSIEDAYQFYVNYGVKVGFNVRKKYHKKKKNGVVSRVTFCCSKEGFRQVDRRKESVLYTRPVSRIGCRADIACLLGKDSKYKVVSFNGNHNHELVRTPSKHILKAIGSISSAQKTSVKNAQELEISANATMEPMSKEVGDKEHLGILDKIHNSHIHKEDKSRIEKGEARVLLQYFQKRQMESYSFFYALQLDEDDMITNIFWTDVRSICDYRLFGDVLCFDTTCRIKEHARPFVTFIGVNHHKQSVVFGAALLYDETIESFKWLFETFLGAMSGKQPKTILTDHSVAMAKAISDVFPETQHRLCVWHIFQNATKNLSHVFDSSNQFAHDFSRCLYDYECEDDWLLAWQQMLDIYNLNDNQWLADLFELREKWSMVYGRHTFTAVMKSTKRSESTDNLLKKYLKPRYDILHFLEHYEKVLADRRYEELIADFKMNQTTPVLLRNTGMLQHAAEVYTPIMFKLFQKEYVDILMCNIYKVGKLDATTEYKVSCFGRSHQWMVKYEALTQTITCSCMKFTFMGILCTHALKVLEKKNVNRIPTSYILKRWTKEARATSGFENQMHEVSENLKESFGKRYNHLCCNACQITSLAVEHEKLFEYTAQKFNLLLKDLENMKKNILVESNQVEDSCLIGDNLEGHGVKRKSTFGSPHNQLNDPLEKRR 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5847418 5852287 - Sed0007023.5 Sed01g0791 700095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0791 713 Pfam MULE transposase domain 270 364 IPR018289 -
Sed01g0791 713 MobiDBLite consensus disorder prediction 693 713 - -
Sed01g0791 713 Pfam FAR1 DNA-binding domain 61 148 IPR004330 -
Sed01g0791 713 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 668 IPR031052 GO:0006355(InterPro)
Sed01g0791 713 Coils Coil 660 680 - -
Sed01g0791 713 ProSiteProfiles Zinc finger SWIM-type profile. 554 586 IPR007527 GO:0008270(InterPro)
Sed01g0791 713 Pfam SWIM zinc finger 560 586 IPR007527 GO:0008270(InterPro)
Sed01g0791 713 SMART 26again6 561 588 IPR006564 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0791 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0789 Sed-Chr1:5847418 Sed01g0791 Sed-Chr1:5847418 0.00E+00 dispersed
Sed01g0791 Sed-Chr1:5847418 Sed04g3765 Sed-Chr4:46303663 7.70E-107 dispersed
Sed01g0790 Sed-Chr1:5847418 Sed01g0791 Sed-Chr1:5847418 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005174 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 6 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37161 PF10551 MULE 2.40E-27 CL0219 Sed TF