Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0796 ATGAAGTTCTGTTCAGTATCAGTGTTTTCTCTCATTTTTGTTATTATTAATCAACTTCACCTGGCCATTGCCGACCTGAACTCAGACAAGCAAGCTCTTCTTGACTTCGTATCTTCTGTTCCACATCGTCGGAGCCTTAACTGGAACGATAATGCATCAGTATGCACAACTTGGGTTGGCATTACTTGCAGTGAAGATGGAACCCATGTGCTTAACCTCCGACTACCTGGGATTGGACTCGTTGGTTCGATTCCTCCTAACACTCTAGGGAAACTTGATGGCCTAAAGATTCTTAGTCTTCGTTCCAACCTCCTTAGCGGAAAATTACCGTCGGATATTACCTCACTTCCTTCTCTCCAATATCTTTATCTCCAACATAATAACTTCTCTGGTGACTTTCCTTCCTCCCTTTCACCTACACTTAATGTATTGGATCTATCATTCAATTCATTAGAAGGAGAGATTTCAAAGGCCATTCAAAATTTGACACAGCTAACTGGATTGAACCTCCAAAACAACAATCTTTCTGGTTCTATACCAGATGTCAACCTCCCCAAGCTCAAGCATTTCAACATAAGTTATAACCATCTTAATGGTTCTATCCCAACTTTTTTTAAGACCTTCCCAAATTCATCCTTCGTTGGAAATAGTTTACTATGTGGATTGCCTATAAAACCTTGCTCCATAGTTCTAAATCCAGCTCCTAATGTTCCACCTCTACCTTCCATTTCTCAAAACCAGAGCTCCAAAAAACTGAAGCTGGGAGTTATCATAGCTATTGCAGTTGGTGGATTTTTCCTTCTATTCCTTTTAGTTCTTTTTGTGGTTTTGTGCTGTTTAAAGAAAAAGGGCGGCGAAGGTACCGGCGAAAGAAAAGGGAAAGTTTCTGGTGGTGGGAGAAGCGAAAAACCGAAAGAGGAGTTTGGAAGTGGTGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTCTTTGAAGGCTGTTCACTTAACTTTGATCTTGAAGACCTATTAAGAGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGGACAGCTTATAAAGCTGTCCTGGAGGAACCTACCACAGTTGTGGTGAAAAGATTGAAGGAAGTGGTGGTGGGGAAGAGGGAGTTTGAACAGCAGATGGATATTGTCGGAAGGGTCGGGCGTCACCCGAACGTCATGCCACTTCGAGCGTATTATTACTCGAAGGATGAAAAGCTCCTTGTTTATGATTATGTCTCAGGAGGCAGTTTGTCATCACTCTTACATGGAAACAGGGAAGGGGAAAGAACTCCACTTGATTGGGACACAAGAGTGAAAATTGCCCTTACAACAGCAAAGGGAATTGCTCATATTCATACAGTTGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCAAATGTTCTCCTAATTCAAGATGTCAATGCTTGTGTCTCTGACTTTGGCCTTACCCCGCTCATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCCGAGGTGATCGAAGCTCGCAAACATACACACAAGTCAGATGTTTACAGCTTTGGTGTTCTTCTTCTCGAAATGTTGACCGGAAAAGCTCCCCTCCAATCACCTGGTCGTGACGAAATGGTTGATCTTCCTCGGTGGGTCCAGTCGGTTGTGAGGGAGGAATGGACAGCTGAAGTTTTCGACGTTGAGCTAATGAGGTACCAAAATATTGAAGAAGAGATGGTGCAGATGCTGCAAATAGCAATGACTTGTGTAGCGAAGTTGCCCGACATGAGACCGAACATGGACGAAGTAGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCAGAAGAGAACAAATCCAAGGACTCAAATGTGCAGACCCCATGA 1893 43.69 MKFCSVSVFSLIFVIINQLHLAIADLNSDKQALLDFVSSVPHRRSLNWNDNASVCTTWVGITCSEDGTHVLNLRLPGIGLVGSIPPNTLGKLDGLKILSLRSNLLSGKLPSDITSLPSLQYLYLQHNNFSGDFPSSLSPTLNVLDLSFNSLEGEISKAIQNLTQLTGLNLQNNNLSGSIPDVNLPKLKHFNISYNHLNGSIPTFFKTFPNSSFVGNSLLCGLPIKPCSIVLNPAPNVPPLPSISQNQSSKKLKLGVIIAIAVGGFFLLFLLVLFVVLCCLKKKGGEGTGERKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSLNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGRHPNVMPLRAYYYSKDEKLLVYDYVSGGSLSSLLHGNREGERTPLDWDTRVKIALTTAKGIAHIHTVGGPKFTHGNIKASNVLLIQDVNACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5886268 5891195 - Sed0014948.1 Sed01g0796 700100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0796 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0796 630 FunFam Leucine-rich repeat receptor-like protein kinase 139 227 - -
Sed01g0796 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Sed01g0796 630 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Sed01g0796 630 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
Sed01g0796 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Sed01g0796 630 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Sed01g0796 630 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Sed01g0796 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524(InterPro)
Sed01g0796 630 CDD STKc_IRAK 343 606 - -
Sed01g0796 630 SUPERFAMILY L domain-like 39 227 - -
Sed01g0796 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Sed01g0796 630 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Sed01g0796 630 MobiDBLite consensus disorder prediction 285 312 - -
Sed01g0796 630 FunFam pollen receptor-like kinase 1 305 412 - -
Sed01g0796 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Sed01g0796 630 MobiDBLite consensus disorder prediction 606 621 - -
Sed01g0796 630 PANTHER OS05G0588300 PROTEIN 13 620 IPR050994 -
Sed01g0796 630 Pfam Protein kinase domain 341 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0796 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Sed01g0796 630 MobiDBLite consensus disorder prediction 606 630 - -
Sed01g0796 630 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Sed01g0796 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0796 Sed-Chr1:5886268 Sed14g0561 Sed-Chr14:5658830 9.90E-183 dispersed
Sed01g0796 Sed-Chr1:5886268 Sed05g3338 Sed-Chr5:42659736 3.80E-267 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78559 PF00069 Pkinase 9.20E-37 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0796 - - - 0.0