Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0800 ATGAATCCCAAGCACGTGGCTGTGACAGAGAGAGAAAAACCAGTCTTCCGAAAACACAACACAGAGAAGAACAGAGAGAGAGAGAGAGCCCTAAAATTGGGGGCCAAGGAAATGCAAGATCCAGCCTCTCCAAACCCTATCCACACTCCAATTTCCAATCCAATTCCCCCATTCAACGTTTCCCGGCCGCCGGCACTAGCTCCGGCGCCGCCGAATTCCAACAAACCGCGGCCGGTGGCGAATGCCAATGCTGGGAATGCCTCGTTTCTGCCTACACCCGGTTCTCATCATCGGAGGTCTCATTCGGAAGTCACCTTCCGCTTGACTGAGGACATGATGGATCTCTCCGGGTCGGATCCGTTCAACGGCTGCTCGGAGATCGGATCGGAGGACGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGGAATTTGGTGGATGATCTTAATGCCAATGAGGTGGGGGAGAAGACTTCCAAGCCAAGGCATCGGCATAGCGTTTCGGTGGACGGAGCGACATCGTCGTCGTCGAGCATGTTTGGGGAGATTATGGAAGCTAAGAAAGCTATGCCTCCTCAACAGTTGGCTGAGCTTTGGACCAGTGACCCCAAACGCGCCAAAAGGATATTGGCTAATCGACAATCTGCTGCTCGCTCAAAAGAGAGGAAGACACGATACATACAAGAGTTGGAGCGCAAAGTGCAGACCCTTCAAACCGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGGTTTTTCTTTCGATATAG 783 51.47 MNPKHVAVTEREKPVFRKHNTEKNRERERALKLGAKEMQDPASPNPIHTPISNPIPPFNVSRPPALAPAPPNSNKPRPVANANAGNASFLPTPGSHHRRSHSEVTFRLTEDMMDLSGSDPFNGCSEIGSEDDDLFSTYIDVKKLGGNLVDDLNANEVGEKTSKPRHRHSVSVDGATSSSSSMFGEIMEAKKAMPPQQLAELWTSDPKRAKRILANRQSAARSKERKTRYIQELERKVQTLQTEATTLSAQLTLFQVFLSI 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5921394 5925040 + Sed0002448.2 Sed01g0800 700104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0800 260 SMART brlzneu 203 260 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0800 260 MobiDBLite consensus disorder prediction 159 179 - -
Sed01g0800 260 MobiDBLite consensus disorder prediction 1 103 - -
Sed01g0800 260 Gene3D - 206 258 - -
Sed01g0800 260 CDD bZIP_plant_RF2 208 255 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0800 260 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 205 255 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0800 260 SUPERFAMILY Leucine zipper domain 207 255 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0800 260 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 73 255 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed01g0800 260 FunFam probable transcription factor PosF21 206 258 - -
Sed01g0800 260 Pfam bZIP transcription factor 207 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0800 260 MobiDBLite consensus disorder prediction 1 35 - -
Sed01g0800 260 MobiDBLite consensus disorder prediction 76 95 - -
Sed01g0800 260 MobiDBLite consensus disorder prediction 47 75 - -
Sed01g0800 260 Coils Coil 223 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0800 Sed-Chr1:5921394 Sed05g3342 Sed-Chr5:42715804 4.70E-78 dispersed
Sed01g0799 Sed-Chr1:5921394 Sed01g0800 Sed-Chr1:5921394 1.60E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37163 PF00170 bZIP_1 7.80E-10 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0800 - - - 0.0