Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0802 ATGCCGGAGCTCGAAACCGCCGGCAACAGCAATGTGCTGTTCGGCAAGTACGAGCTCGGAAAGCTCCTTGGCTGCGGCGCCTTTGCCAAGGTCTACCACGCCCGAGACCTCCGCACCGGCCAAAGCGTCGCCGTCAAAATCATCAACAAGAAGAAGATCCACGGCACCGCGACGATGTCCAACATCAAGCGCGAGATCGACATCATGCGGCGGCTCCGCCACCCGCACATCGTCAAACTCCATGAAGTTCTCGCCACCAGATCCAAGATCTACTTCGTCATTGAGTTCCTCAAGGGCGGCGAACTCTTCTCCAAGGTCGCCAAGGGCCGATTCACCGAAAATCTCAGCCGCAAATTCTTCCAGCAGTTGATCTCCGCCGTCGGATTCTGTCACGCCCGCGGCATCTACCACCGCGATCTGAAGCCGGAGAACATCCTCATCGACGAGAACGGAAACCTCAAGGTCTCCGACTTCGGTCTCAGCGCGCTAAACGGCCAGATCCGCTCCGACGGCCTTTTGCACACTCTGTGCGGAACTCCGGCTTACGTCGCGCCGGAGATTCTCTCGAAGAGAGGCTACGACGGTGCGAAGGTCGATGTGTGGTCCTGTGGTGTGATTCTGTTTGTATTGACTGCAGGTTACCTTCCATTCAACGATCCGAATCTAATGGCGATGTACAAGAAGATTTACAATGGCGAATATCGTTGCCCTAAATGGATGTCGCCGGATCTCAAGAGGTTCTTATCCAGACTTCTCGATACAAATCCGCAAACGAGAATCACCGTCGATGAGATCCTGACCGATCCGTGGTTCAGAAAAGGATCGGCGATTACAGAGATCAATTTCTACGATGATTACGAGGTGAAATCGGATGAGAAAGAAGAATCTCAATCGATGAATCTGAATGCATTCGACATCATATCGTTCTCGTCGGGATTAGATCTGTCAGGATTGTTCGATAATTCGCACAACGCCGTTGACAACGAGCGATTCGTACTGGCAGAGGCGCCGGAGACGATTGGGAAAAAATTGGAGGAGTTCGCCAGGGCTGAGAATTTGAAGGTGAAGAAACAGAAGGAATTTGGCGTTGAACTGGAAGGGCAGAATCGTAATTACTCAGTCGGAATCGAAATTTTCCTGTTAACCGACGGATTGGTGGTGGTGGAGGCGAGAAGAAGAAGCGGCGATGCAGAATTGTGTAAGGAATTGTTGAAGAAGAAGCTGAAAGGTCATCTCATCGGCGGCGAAGCGTCGACGTCGACGGTCGGACAAGATTCCGGCGACCGGAATGAAGATTAG 1299 52.35 MPELETAGNSNVLFGKYELGKLLGCGAFAKVYHARDLRTGQSVAVKIINKKKIHGTATMSNIKREIDIMRRLRHPHIVKLHEVLATRSKIYFVIEFLKGGELFSKVAKGRFTENLSRKFFQQLISAVGFCHARGIYHRDLKPENILIDENGNLKVSDFGLSALNGQIRSDGLLHTLCGTPAYVAPEILSKRGYDGAKVDVWSCGVILFVLTAGYLPFNDPNLMAMYKKIYNGEYRCPKWMSPDLKRFLSRLLDTNPQTRITVDEILTDPWFRKGSAITEINFYDDYEVKSDEKEESQSMNLNAFDIISFSSGLDLSGLFDNSHNAVDNERFVLAEAPETIGKKLEEFARAENLKVKKQKEFGVELEGQNRNYSVGIEIFLLTDGLVVVEARRRSGDAELCKELLKKKLKGHLIGGEASTSTVGQDSGDRNED 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5953366 5955131 + Sed0015723.1 Sed01g0802 700106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0802 432 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0802 432 CDD CIPK_C 302 398 - -
Sed01g0802 432 SUPERFAMILY Protein kinase-like (PK-like) 13 289 IPR011009 -
Sed01g0802 432 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524(InterPro)
Sed01g0802 432 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Sed01g0802 432 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Sed01g0802 432 Gene3D Kinase associated domain 1, KA1 297 414 - -
Sed01g0802 432 FunFam Non-specific serine/threonine protein kinase 7 302 - -
Sed01g0802 432 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Sed01g0802 432 Pfam NAF domain 300 357 IPR004041 GO:0007165(InterPro)
Sed01g0802 432 Gene3D Transferase(Phosphotransferase) domain 1 97 277 - -
Sed01g0802 432 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0802 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed01g0802 432 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0802 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0802 Sed-Chr1:5953366 Sed05g3809 Sed-Chr5:45736155 3.60E-208 dispersed
Sed01g0802 Sed-Chr1:5953366 Sed01g0803 Sed-Chr1:5956745 2.60E-110 tandem
Sed01g0802 Sed-Chr1:5953366 Sed05g3807 Sed-Chr5:45731243 1.10E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78560 PF00069 Pkinase 4.30E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0802 - - - 0.0