Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0804 ATGAATGATAAGCAGATCGTGGTGGTTCAAAGATATGAATTAGGGAGATTACTCGGTCAGGGAGCCTTTGCAAAGGTATATTTTGCGAGGAATACGGGAACTAATCAAAGTGTAGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCCCTAATCGATCTGATTAAGCGTGAAATATCAGTTATGAGACTTGTTAGCCATCCTAATATTATACATCTGTATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTTTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAAGCTGAAGGAGGAGGTTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTGGATTTTTGTCACAGTAGGGGAGTATATCACCGCGATATAAAGCCAGAGAACCTACTGCTCGATGAAAACGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAACGTCAAGATGGGTTGCTGCACACTACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAGTAAGAAGGGTTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTTTTATTGGCAGGTTATCTCCCATTCCATGATTCGAATTTGATGGAGATGTATAGGAAGAGCGGAAGAGCGGAGTATAAATGTCCTAGTTGGTTCCCTCGTGACGTACGGAGGCTGCTAATGAGGATGCTTGATCCAAACCCCATTACTAGAAATTCCATGGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTCTAAGATGCTAAGAAGTGAAAAAGGAAATGATGCTAAAGCAACTGAAAATGCATCATCTGTTAATGGACCATCTGAGGGTAGTGTGTCAGCCGATGGAAATCAAGAGCCAGATAAACCCCTGACTTTGAATGCTTTTGATATCGTCTCCCTTTCTGTCGGGTTCAACCTATCTAGTCTATTTGATGACAAATCAAAAAAGAAAGAAACATTGTTTAGTTGTAGAAAACCAGCCTCTGTTATCCTCTCAAAGCTACAAGAAATTGCTAAACTTCTTCAATTTCGAGTGCAGAAGAAGGAAGCGGGCCTACTAAAGTTCGAGGCGCAAACTGAGGGTAAAAAGGGGGCATTGTCCATTGATACAGAGATCTTTGAGGTTACTCCATCCTTTTATTTGGTAGAGATGAAAAAATCTAATGGGGACACATTAGAATATCAGAAGATATTGAAAGAGGATATAAGGCCGGCTCTACAAGATATTGTATGGGTTTGGCAAGGAGAGCAGGAGCAGCAACAACAGCCTCAGCCTCTCCAACCGCAGGATCCGGAGCAAGAGAGCGCGCCACAACAGCATTAG 1389 41.61 MNDKQIVVVQRYELGRLLGQGAFAKVYFARNTGTNQSVAIKVIDKEKITKASLIDLIKREISVMRLVSHPNIIHLYEVMATKTKIYFVLEYAKGGELFDKVAKGKLKEEVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVISKKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKSGRAEYKCPSWFPRDVRRLLMRMLDPNPITRNSMAMIRQSSWFKKGLRSKMLRSEKGNDAKATENASSVNGPSEGSVSADGNQEPDKPLTLNAFDIVSLSVGFNLSSLFDDKSKKKETLFSCRKPASVILSKLQEIAKLLQFRVQKKEAGLLKFEAQTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWQGEQEQQQQPQPLQPQDPEQESAPQQH 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5956745 5960216 - Sed0012579.2 Sed01g0804 700108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0804 462 CDD CIPK_C 315 429 - -
Sed01g0804 462 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0804 462 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Sed01g0804 462 Pfam NAF domain 311 369 IPR004041 GO:0007165(InterPro)
Sed01g0804 462 Gene3D Kinase associated domain 1, KA1 311 434 - -
Sed01g0804 462 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Sed01g0804 462 MobiDBLite consensus disorder prediction 284 307 - -
Sed01g0804 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0804 462 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0804 462 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0804 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed01g0804 462 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Sed01g0804 462 Gene3D Transferase(Phosphotransferase) domain 1 3 310 - -
Sed01g0804 462 MobiDBLite consensus disorder prediction 438 462 - -
Sed01g0804 462 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Sed01g0804 462 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sed01g0804 462 FunFam Non-specific serine/threonine protein kinase 5 308 - -
Sed01g0804 462 MobiDBLite consensus disorder prediction 277 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0804 Sed-Chr1:5956745 Sed05g3807 Sed-Chr5:45731243 3.60E-222 dispersed
Sed01g0803 Sed-Chr1:5956745 Sed01g0804 Sed-Chr1:5956745 4.90E-256 tandem
Sed01g0804 Sed-Chr1:5956745 Sed01g0805 Sed-Chr1:5956745 4.90E-256 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78562 PF00069 Pkinase 4.90E-73 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0804 - - - 0.0