Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0806 ATGGCAGTGGCTTTGGCATTAGCCTTATTGTCAGTGTTCATGGGCAGCTCCTCTGCTCAGCTCTCCCCCAACTTCTACTACAAGAGCTGCCCTAAACTTCTCGGCATCGTTAGGGCAGGAGTTCAGTCCGCGGTTGCCAAGGAAGCTCGCATGGGCGCTTCTCTTCTTCGTCTCCACTTCCACGATTGCTTCGTTAATGGTTGTGATGGATCGATTCTTTTAGAAGATACTCCTACGTTTACAGGAGAGCAAACTGCAGCTCCCAATAATAGATCTGTTCGAGGGTTCAACGTTATTGAGAGTATAAAGAAAAATGTCGAAAAAGTTTGTCCTGGCATTGTCTCTTGTGCTGATATTTTGACTATTTCTGCTCGTGACTCCGTCGTGATGCTTGGAGGGCCAAGTTGGAAGGTAAAATTGGGAAGAAGAGATTCGAAAACAGCCAGTTTATCAGATGTGACCGGGGCCATTCCTCCCCCAACCTCAACTCTCGGAACCCTCATAAATCGATTCAACACCAAAGGCCTTTCACCTCCTGATTTGGTTGCTTTATCTGGTGCTCATACAATAGGAAAAGCAAGGTGTATGTTTTTCAAGAACCGTATATACAATGAGACCAACATCAACAAGTCGTTCGCGAACGAGCGACAGAGGAACTGCCCGAGAAACGGAGGAGACGACAATCGCACCCCTTTCGATTTCAGAACTCCGTATGTTTTCGACAACAACTACTACAAGAACCTTGTGGAGCAAAAGGGTTTGCTTCGGTCGGACCAGGTGCTGCGCAATGGTGGATCGACCGACCCCTTGGTTCGACTCTACAGCCACAACACTGCTGCATTTGAATCTGACTTTGTAGCGGCTATGGTCAAGATGGGCGACATCGAGCCGCTCACTGGTTCGCAAGGCCAGATTCGGAAGATCTGCAGCCGACCCAATTGA 942 48.41 MAVALALALLSVFMGSSSAQLSPNFYYKSCPKLLGIVRAGVQSAVAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFNVIESIKKNVEKVCPGIVSCADILTISARDSVVMLGGPSWKVKLGRRDSKTASLSDVTGAIPPPTSTLGTLINRFNTKGLSPPDLVALSGAHTIGKARCMFFKNRIYNETNINKSFANERQRNCPRNGGDDNRTPFDFRTPYVFDNNYYKNLVEQKGLLRSDQVLRNGGSTDPLVRLYSHNTAAFESDFVAAMVKMGDIEPLTGSQGQIRKICSRPN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5960997 5969145 - Sed0016163.1 Sed01g0806 700110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0806 313 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 247 264 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 231 246 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 FunFam Peroxidase 158 292 - -
Sed01g0806 313 SUPERFAMILY Heme-dependent peroxidases 20 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 PANTHER PEROXIDASE 72-RELATED 10 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 Gene3D - 24 310 - -
Sed01g0806 313 ProSiteProfiles Plant heme peroxidase family profile. 20 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 Pfam Peroxidase 37 276 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0806 313 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601(InterPro)
Sed01g0806 313 CDD secretory_peroxidase 20 311 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g0806 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Sed01g0806 313 Gene3D Peroxidase, domain 2 158 292 - -
Sed01g0806 313 FunFam Peroxidase 24 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0806 Sed-Chr1:5960997 Sed05g3806 Sed-Chr5:45708736 4.50E-152 dispersed
Sed01g0806 Sed-Chr1:5960997 Sed01g0807 Sed-Chr1:5970297 3.90E-148 tandem
Sed03g0351 Sed-Chr3:2118743 Sed01g0806 Sed-Chr1:5960997 7.20E-105 transposed
Sed04g1504 Sed-Chr4:29922708 Sed01g0806 Sed-Chr1:5960997 1.10E-92 transposed
Sed06g1480 Sed-Chr6:39529727 Sed01g0806 Sed-Chr1:5960997 3.80E-98 transposed
Sed01g0806 Sed-Chr1:5960997 Sed05g3801 Sed-Chr5:45692405 4.30E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0806 K00430 - csv:101208108 551.206