Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0807 ATGGCTATTAGATGTAACAAAATGGCTATGGCTTTAGTAGTCGCCTTATTGGCAGTGTTCATAGGGAGCTCCTCTGCTCAGCTCTCTACCAACTTCTACTACTACACCTGCCCCAAGCTCCTCGGTACCGTTCGAGCCGGTATTCAGTCCGCTGTCGCTAAGGAAGCTCGCATGGGTGCTTCCCTTCTTCGCCTCCACTTTCACGACTGTTTTGTTAATGGTTGTGATGGATCGATTCTTCTCGAAGATACCCCTACGTTTACGGGAGAGCAAACTGCGGCTCCCAACAATAGATCTGTTAGGGGCTTCGACGTTATTGAGAGTATAAAGACAAATGTTGAAAAAATTTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTCGTGATTCTGTTGTAGCGCTTGGAGGACCAAGTTGGGAGGTGAAATTGGGAAGAAGAGATTCCCAAACAGCTAGCTTCTCTGATGTCGCTGGTGCCATTCCTCCACCAACGTCCACGCTCGATGCCCTCATCGACCGGTTCGACAGTAAAGGGCTTTCCCCTCGAGACTTGGTTGCCTTATCTGGGGCACACACTATCGGACAAGCAAAGTGTTTGTTCTTCAAGAACAGAATATACAACGAGAGCAACATCGACGAGTCGTTTGCCGAGGAACGACAGAAGAATTGCCCCGTAAATGGCGGAGACGACAACCGTGCCCCTTTAGACTTGAGAACCCCAACGCTTTTCGACAACTACTACTACAAGAACCTTCTAGACGAAAAGGCTTTGCTCCGGTCCGACCAGGTGCTCCACGACGGCGGATCCACCGATTCCTTGGTTGAACTCTATAGCGACGACAGCGATGCGTTCGAGGCTGACTTCGTCGCAGCCATGGTTAAGATGGGCGACATTGAGCCGCTCACTGGCTCACAGGGTGAGATCAGAAAAGTTTGCAGCCGACCCAACTAG 963 50.26 MAIRCNKMAMALVVALLAVFIGSSSAQLSTNFYYYTCPKLLGTVRAGIQSAVAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFDVIESIKTNVEKICPGVVSCADILTLSARDSVVALGGPSWEVKLGRRDSQTASFSDVAGAIPPPTSTLDALIDRFDSKGLSPRDLVALSGAHTIGQAKCLFFKNRIYNESNIDESFAEERQKNCPVNGGDDNRAPLDLRTPTLFDNYYYKNLLDEKALLRSDQVLHDGGSTDSLVELYSDDSDAFEADFVAAMVKMGDIEPLTGSQGEIRKVCSRPN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5970297 5972357 - Sed0003708.1 Sed01g0807 700111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0807 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 Pfam Peroxidase 44 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 Gene3D - 31 317 - -
Sed01g0807 320 FunFam Peroxidase 31 172 - -
Sed01g0807 320 PANTHER PEROXIDASE 72-RELATED 14 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 ProSiteProfiles Plant heme peroxidase family profile. 27 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 CDD secretory_peroxidase 27 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g0807 320 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Sed01g0807 320 FunFam Peroxidase 165 299 - -
Sed01g0807 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Sed01g0807 320 Gene3D Peroxidase, domain 2 165 299 - -
Sed01g0807 320 SUPERFAMILY Heme-dependent peroxidases 27 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0807 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0807 Sed-Chr1:5970297 Sed05g3806 Sed-Chr5:45708736 3.00E-159 dispersed
Sed01g0806 Sed-Chr1:5960997 Sed01g0807 Sed-Chr1:5970297 3.90E-148 tandem
Sed01g0807 Sed-Chr1:5970297 Sed01g0808 Sed-Chr1:5977211 8.90E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0807 K00430 - csv:101204245 566.614