Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0808 ATGGCTGCCCTTCGCTCTCTTTTGCTATGCATTTTTCTTTTATCACCTACTCTAAGTTATAGCCATGCAAAGCTAACTCCAAACTTTTACGACAAAGTGTGCCCTAAAGCCTTGCCGACCATCAAATCCGTCGTTTGGAAGGCGATCCAACGCGAGCCTCGCATGGGAGCTTCGCTCTTACGTCTCCATTTCCACGACTGCTTTGTCAAAAGCAGTTCATCTTTCTTGGGTTGCGATGGGTCAGTTTTGCTGGACGATACCGCTACCTTTACGGGAGAAAAGACGGCGTTGCCTAATATAAACTCAATTAGAGGATTTGAAGTCGTCGATGAGATTAAGAAACAAGTTAACAAAGCATGCAAACGTAATATTGTATCTTGTGCTGATATCTTGGCCGTTGCTGCTCGTGACTCTGTAGCCATCCTTGGTGGACCAAACTATAAATTATTATTAGGAAGAAGAGATGCAAGAACAGCAAGCACAAACGACGCCAACAGAAATCTCCCCCCACCATTTTTCAACTTCACACAGCTTCTATCCAACTTCCAATCTCATGGCCTCGACCTCAAGGACCTCGTCGTCTTATCGGCCGGCCACACCCTCGGCATGGCCCGGTGCACCACATTCCGAAGCAGGATATACAACGACACCAACATCAACCCGAGGTTCGCAACCATGCTACAGGCTAAGTGCCCTCGGAGCGGCAACGACAACAAACTTCAGGGCCTTGACAACACTCCAAATTTCGTTGACACTTCCTACTTCAAGGCTTTGATGAAGAAGAAGGGCCTTCTACATTCCGACCAGGAACTCTTCGGCGGCGGCAACTGCGACAGCGATAAATTGGTGTCGTTTTATAGCAGATATCCAACTTCCTTCATAAAGGACTTTGGATCTTCCATGATGAAAATGAGCATTATGAAACCACTTACTGGAAGTGATGGGGAAATTAGGGTCAATTGCAGGGTTATCAACTAA 978 46.52 MAALRSLLLCIFLLSPTLSYSHAKLTPNFYDKVCPKALPTIKSVVWKAIQREPRMGASLLRLHFHDCFVKSSSSFLGCDGSVLLDDTATFTGEKTALPNINSIRGFEVVDEIKKQVNKACKRNIVSCADILAVAARDSVAILGGPNYKLLLGRRDARTASTNDANRNLPPPFFNFTQLLSNFQSHGLDLKDLVVLSAGHTLGMARCTTFRSRIYNDTNINPRFATMLQAKCPRSGNDNKLQGLDNTPNFVDTSYFKALMKKKGLLHSDQELFGGGNCDSDKLVSFYSRYPTSFIKDFGSSMMKMSIMKPLTGSDGEIRVNCRVIN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5977211 5978809 + Sed0010405.1 Sed01g0808 700112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0808 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Sed01g0808 325 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 Pfam Peroxidase 42 275 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 Gene3D Peroxidase, domain 2 169 304 - -
Sed01g0808 325 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 ProSiteProfiles Plant heme peroxidase family profile. 24 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 SUPERFAMILY Heme-dependent peroxidases 25 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0808 325 Gene3D - 28 322 - -
Sed01g0808 325 FunFam Peroxidase 28 174 - -
Sed01g0808 325 FunFam Peroxidase 169 304 - -
Sed01g0808 325 CDD secretory_peroxidase 24 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g0808 325 PANTHER PEROXIDASE 72-RELATED 14 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0808 Sed-Chr1:5977211 Sed05g3801 Sed-Chr5:45692405 3.00E-143 dispersed
Sed01g0807 Sed-Chr1:5970297 Sed01g0808 Sed-Chr1:5977211 8.90E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0808 K00430 - csv:101204979 504.212