Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0827 ATGATGTGCGATGGTTGCAATAGGAAATCTGCAAGCCCAAACTTCATGATGGATGGTTGCAATAGAAATTTGGGGTTTTGTATCTCGGTTTTGCTCGAATTTTCGGCTACGGATGACCTGATTGGATTTAGGAGTGCTGTTGAGGAAGGTGGCCATGATATTGATGAAGCAAGTTTGTGGTATGGGAGAATTTTTGGTTCTAAAAAGATGGGATATGAAGAAAGGACCCCTCTTATGGTTGCAGCCATGTTTGGTAGTTTGAATGTCATTTCGTATATCGTTCACAGTGGTCGTGTTGATGTTAATCAGGCTTGTGGTTCGGATGGTGCAACGGCTCTCCATTGTGCAGTTGCTGGTGGCTCTGCTGTTTCAGATCAGGTTGTCAAACTCTTGCTTGATGTTTCCGCTGATGCGAACGCTGTTGATGCAAATGGTTACCGGCCCTGTGACTTGATTGCTCCTGATTTTACTTTAGCCTCTTACTATTCGAGGAGAAAGGTGTTACAGCAGTTACTAAATGGACTTGCAAACAGCGAAGAAGTCCTTGGTTCATCTGAGGCGATATTGCAGGAGCCACGTGAGCTTTCTACGCCTCGGGTTTCAAGAGATGGGATGGAGAAGAAAGAGTATCCAGTTGATCTCTCACTTCCAGACATCAAGTATGGAATCTATAGCACTGATGAGTTTAGAATGTATACTTTTAAAATCAAACCTTGTACAAGAGCTTACTCTCACGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCGAGGAAATACCATTACAGTTGCGTCCCATGTCCCGAATTCAGAAAGGGCACATGTAGGCAGGGAGATAACTGTGAATACGCTCATGGAATTTTCGAATGTTGGCTTCATCCTGCTCAATACCGTACCCGTCTTTGCAAGGATGAAATTGGATGCACCAGAAAGGTCTGTTTCTTTGCTCACAAACCGGAGGATCTCCGCCCCTTGTACGCGTCAACTGGTTCTGCTGTACTGTCCCCGAGATCAATGTGTGGTTCTTCACTCGACATCGCATCAATCAACCCGTTTACCCTTGGTTCTCCTACATCTGCATCAACAACGCCTGTGACTCCTAGAGTTTCTTCTCCAATGGGAGGAACCATGTGGCAGACTCAATGTAATATTGCACCTCTGACCTTGCAGCTTCCAGGTAGCAGGTTGAAGGCTGCTTTGAGCGCGAGAGACATGGATCTAGATATTGAGTTACTTGGTCTCGAAATCCAGCACCATAGACAGCAACAGTTAATGAATGAGACATCTTGTCTGTCTTCCCCTTCCAAATGGAACAGTGGCTTCTCTACCCCTGGATCTTTTCCGTCCCCAAGGAATAGAAATGGAGAATTGAACGGACTTGGAGGCATGAATCCTTCTAACCTCGAGGAAATTTTCGGGTCCATAGATCCATCAATTTTGCCCCAATTACAAGGACTTTCACTGGATTCTATGGGATCTCAGGTACAATCCCCTTCCGGAAATCAGATGCGCCAAACCCTGAATCAGTCTTTCCTCTCAAGCTATGCTAACAGCATTGGATCCCCTCCTGCTAGGTCGTCACAACCGTTCGGCATCGACTCATCTGTGTCTGCTGCAACAAGCAATCGGAGTTCCAGGGCTGCTGCTTTCGCTAAGCGCAGCCAGAGCTTTGTCGAACGTAGTGTGGTGAACCGACATTCTGGACTTTCACCCCCCGCTACATCTGCAACTGTCATGTCTTCGAACTTCCCTGATTGGGGTTCGCCCGATGGGAAACTAGACTGGAGAATTCATGGAGAAGAGCTCAACAAGTTAAGGAAGTCTGCATCATTTGGGCTTCGCAGCAGCTCTCTAGCAATGTCCACAATGCATGCCACTGCTGCTGAGCCAGACGTTTCCTGGGTTCAGTCCCTGGTAAAGGATGCTCCAACCGAGAGCACCGTGCAGTTGAGTGCAGTTGAGTATGGACGAGCAGCAGCAACAGCAGCTTTGTTATCTTGA 2022 47.23 MMCDGCNRKSASPNFMMDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEGGHDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVISYIVHSGRVDVNQACGSDGATALHCAVAGGSAVSDQVVKLLLDVSADANAVDANGYRPCDLIAPDFTLASYYSRRKVLQQLLNGLANSEEVLGSSEAILQEPRELSTPRVSRDGMEKKEYPVDLSLPDIKYGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDNCEYAHGIFECWLHPAQYRTRLCKDEIGCTRKVCFFAHKPEDLRPLYASTGSAVLSPRSMCGSSLDIASINPFTLGSPTSASTTPVTPRVSSPMGGTMWQTQCNIAPLTLQLPGSRLKAALSARDMDLDIELLGLEIQHHRQQQLMNETSCLSSPSKWNSGFSTPGSFPSPRNRNGELNGLGGMNPSNLEEIFGSIDPSILPQLQGLSLDSMGSQVQSPSGNQMRQTLNQSFLSSYANSIGSPPARSSQPFGIDSSVSAATSNRSSRAAAFAKRSQSFVERSVVNRHSGLSPPATSATVMSSNFPDWGSPDGKLDWRIHGEELNKLRKSASFGLRSSSLAMSTMHATAAEPDVSWVQSLVKDAPTESTVQLSAVEYGRAAATAALLS 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6085266 6088098 - Sed0023116.1 Sed01g0827 700131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0827 673 Pfam Ankyrin repeats (3 copies) 73 142 IPR002110 GO:0005515(InterPro)
Sed01g0827 673 Gene3D - 38 175 IPR036770 -
Sed01g0827 673 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Sed01g0827 673 MobiDBLite consensus disorder prediction 442 465 - -
Sed01g0827 673 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872(InterPro)
Sed01g0827 673 MobiDBLite consensus disorder prediction 442 460 - -
Sed01g0827 673 Pfam CCCH-type zinc finger 273 292 IPR041367 -
Sed01g0827 673 Gene3D - 269 331 - -
Sed01g0827 673 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515(InterPro)
Sed01g0827 673 SMART c3hfinal6 268 294 IPR000571 GO:0046872(InterPro)
Sed01g0827 673 SMART c3hfinal6 303 326 IPR000571 GO:0046872(InterPro)
Sed01g0827 673 SMART ANK_2a 73 103 IPR002110 GO:0005515(InterPro)
Sed01g0827 673 SMART ANK_2a 108 140 IPR002110 GO:0005515(InterPro)
Sed01g0827 673 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Sed01g0827 673 PANTHER UNKEMPT FAMILY MEMBER 69 649 IPR045234 -
Sed01g0827 673 SUPERFAMILY Ankyrin repeat 70 177 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0827 Sed-Chr1:6085266 Sed07g2572 Sed-Chr7:41300520 1.50E-197 dispersed
Sed01g0827 Sed-Chr1:6085266 Sed05g3774 Sed-Chr5:45496311 1.6e-311 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37166 PF12796 Ank_2 3.20E-08 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0827 - - - 0.0