Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0841 ATGAATCCTAAGCTTAACGGTTTCTCAGATGATGATGTTGTAGATTATAACTTACATCATCAAACCCCTTTAACCCATTTGTATGATCATAATTCTTTACCCACTTCATATCTACACCCTGAACATCAAAACAGTTTTAAATTCAGCCACCCATCTCCCTATCTTGTTCCCTCCCTTGACAATGCTGTTTCTCTGTCGTCGAGCTCGGGTGCGGACTCTTCCCCGAACGACACTGACTTGAAGGAAACAGTTCTCAATTACATAACCCAAATGCTTATGGAAGAGAATTTGGAGGAGATGCCCTGCACGTTTTATGATGCTTTGGGCCTTCAAGTTACTGAGAAATCGTTCTACGATGCTCTCCATTCTCCCGACCCGCCATGTGTTGCTGTTGGTCTTGGAGAATATAAGCCCTCTATGCTTGGAACAGCATTTCCGAGTAACGCAAATCAGTCGAATTTCGGGCCTAGAAATCATGAGTTGTTGGATCAGAATATCTTCAGTGGTAGCACATCCATTTTGCAATATAAAAAAGGATTGGAGGAGGCAAGGAAGTTTCTTCCGGTGAGTAATCAGCTGAATATTGATCTTGAAGCAGCTTCTAAGGTAGTAAAGAATACATCAAATGGATCGAAGGGAAGGAAGAATCGTGAACGCGAAGATGTAGAAGAAGGGAGAAGAAACAAACATGCTAGTGTTTATGAGGATGATGAGGAAGAAATATCCGAGATGTTCGATAAGGTTTTACTTCTCGATTACGGAAAAGAGACCTCTCAAATGGGTGGTTGTGATGGACAACTTCATGAATCTTTTGCGAGGAAAGCTCGGGACAAGAAACACGACAAGAGAAAGGACTCTGTGGATTTTAGTAATCTTCTGATATTATGTGCACAAGCTGTTGCTTCTGATGACCGTAGGATTGCTTATGAACTACTTAAGCAGATTAGGCAACATTCTTCAACCACTGGGGATGGTTCCCAAAGAATGGCTCATTTTTTCGCCAACGCTCTTGAGGCTCGCATGGCTGGCACTGGCACGGGAGGCAGAATGTACTATGATTCACTAGCTCATAGCAAAATCTCAGCAGCTGATATGTTGAAAGCTTACCATGCACTCTATTCATCCTGCCCTTTTAGAAAACTCTCACTCTTTTTCATGATTAAAATGATTATGAAGGTTGCTGAGAAGGCTAAGAGTCTTCATGTTGTTGATTTTGGCATTTGCTATGGCTTCCTATGGCCAATGTTGATTCAGTTTCTTGCCCAACTACCTGATGGTCCACCTAAGCTACGCATTACGGGTGTAGATAGTCCTCTACCGGGATTTCGTCCAACAGAAAAGATCAACGAGTCAGGCCGCCGTTTAGCAAGATACTGTGAGCGCTTTAATGTTCCTTTCCAATATCAAGCCATAGCATCACATAACTGGGAAACCATCCGAATTGAGGACTTCAAGCTCGATAGCAATGATGTGCTTGCTGTGAACTCTTTCTACAGGTTTTGCAACCTACTGGATGAAACTGTCGAAGAAAGTAGTCCAAGAGATATTGTTCTGCGTTTAGTAAGGAAGATGAATCCAAAGATCTTTGTCCATAGTGTGATTAATGGATCCTACCACACGCCCTTCTTCGTAACACGAGTGAGAGAGGCACTCTTCCACTTCTCTGCCTTGTACGATTCTTTAGACATTAATTTACCTCATGAAAGCGAAGAGAGGATGATGCTAGAGAGAGAGTTTTTCGGGCAGCAAATCATGAACGTAGTAGCATGTGAGGGTGCCGAGAGAGTTGAGAGGCCTGAAACCTATAAGCAATGGCAGGTTCGGTGTACGAGGGCGGGTTTCAGGCAGCTTCCTTTGGACAAGGAGATCATGGACAAGTTTAGGACAAAGTTAAGATTCCAATACCACAAAGATTTTGTAGTTGATGAGGATGATGGCTGGATGCTTCAAGGATGGAAAGGTCGCATTGTCTATGGTTCTTGCTGTTGGGTGCCAGCATAG 2001 43.18 MNPKLNGFSDDDVVDYNLHHQTPLTHLYDHNSLPTSYLHPEHQNSFKFSHPSPYLVPSLDNAVSLSSSSGADSSPNDTDLKETVLNYITQMLMEENLEEMPCTFYDALGLQVTEKSFYDALHSPDPPCVAVGLGEYKPSMLGTAFPSNANQSNFGPRNHELLDQNIFSGSTSILQYKKGLEEARKFLPVSNQLNIDLEAASKVVKNTSNGSKGRKNREREDVEEGRRNKHASVYEDDEEEISEMFDKVLLLDYGKETSQMGGCDGQLHESFARKARDKKHDKRKDSVDFSNLLILCAQAVASDDRRIAYELLKQIRQHSSTTGDGSQRMAHFFANALEARMAGTGTGGRMYYDSLAHSKISAADMLKAYHALYSSCPFRKLSLFFMIKMIMKVAEKAKSLHVVDFGICYGFLWPMLIQFLAQLPDGPPKLRITGVDSPLPGFRPTEKINESGRRLARYCERFNVPFQYQAIASHNWETIRIEDFKLDSNDVLAVNSFYRFCNLLDETVEESSPRDIVLRLVRKMNPKIFVHSVINGSYHTPFFVTRVREALFHFSALYDSLDINLPHESEERMMLEREFFGQQIMNVVACEGAERVERPETYKQWQVRCTRAGFRQLPLDKEIMDKFRTKLRFQYHKDFVVDEDDGWMLQGWKGRIVYGSCCWVPA 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6144970 6146970 + Sed0005877.1 Sed01g0841 700145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0841 666 Pfam GRAS domain family 291 663 IPR005202 -
Sed01g0841 666 MobiDBLite consensus disorder prediction 206 235 - -
Sed01g0841 666 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 266 663 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed01g0841 666 MobiDBLite consensus disorder prediction 211 235 - -
Sed01g0841 666 ProSiteProfiles GRAS family profile. 280 664 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0841 Sed-Chr1:6144970 Sed13g1411 Sed-Chr13:19473431 1.70E-145 dispersed
Sed01g0841 Sed-Chr1:6144970 Sed05g2984 Sed-Chr5:40472508 1.70E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37167 PF03514 GRAS 6.40E-104 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0841 K27753 - csv:101203568 900.582