Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0880 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACCGGAATCAACGACGGTGGGCGGCGGCGGCCATATGTTTCCGTCGATGAAGGGCTTGGCCATTCGTTCTGCTACGTCCGGCCGGATCCATCTAAAGTTCATTCCGAAGAAACCACCACTTTCCGGTCAATTTCCGGCGCCTCTGTAAGCGCCAACACCTCCACGCCTCTGTCTACGGCTCTCCTTCGTCTCTATTCCTACAATTCCGTTGATCCATCCGCCGCTTTCGAGAGTTCCAATTCCTTCGCTTCAATCCCTTTGCAGCCCATCCCCAGAAATACGATCAATTCCGGTCCCATTTCGGGTCATTTCACCGAAATCCATTGTTCCGGTTCTTTGGAAAGAGGGTTTTTGTCGGGTCCGATTGAGCGAGGGTTCATGTCCGGTCCGGTCGACAATTCCGCATCGAGTGAGTTTCAGAGAAGTTTCTCTCATGGAGGAGGGTTTAATCCCAGATCTAAATCGAGGAAAACCCGGTTGATTCGGGTTTTGAAAAGCGCGATTTTGAAGTCGGTTTTTCGTGGGCAGAGTTCCACTGTGGCTCCGATTAAAGCGGTTGTTAAAGAACATGATTGGATTGTGATGCCTGAAAAGCACAATGAGAATTTGACTGTGAGTAGTTTGAATTTTAGCAGTGAGGGAAGTTTGGAAGATGATAATTCAATGAAGAGCCAAAATCTGCAGTGGGCTCAAGGGAAAGCAGGGGAAGATCGAGTTCATGTTGTTGTTTCTGAAGAACATGGCTGGGTTTTTGTTGGGATTTATGATGGATTTAACGGCCCTGATGCTCCGGATTATCTTTTGTCGAATTTGTATTCATCTGTTCATAAAGAGCTCAAAGGTTTGTTGTGGGACGAAAAGCTCAATTCGCCCGTGGTGGTTGCCCCGGCCGTTTCCCCTGTTCAATCTGAGAATCTTTGTTCAGAAACAAGAGATTCTCTTCAGGTTAATGACAATGATTTTGGGAGGAATCCAGTTGATCAAGAGAGTCATCCTTGTGCTAGCGGAGATGGGAATTATGGATCGAATTCGAGACGGAACCGTAAGGGTTCAAGAGGAAAGTTTAGAGGAGCTACTGAGAAGTGGGAGGATAATCAGATGCGTTGGAAGTGCGAATGGGACCGAGAACGATTAGAGCTTGATCGGAGGTTAAAACAGCAGTTGGATCGATCTGGGTTGAACGATTTGAGGTCGATTAATCATTCGGATGTTTTGAAAGCTTTGTCCCAGGCATTGAAGAAAACTGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTGATGCTTATGAAGGGAGATGATGTTTATTTGATGAACGTTGGTGATAGCCGAGCTGTTTTAGCGCAGAAGGTGGAGCCCGATTATTGGTTCAGGAAGATTCGACAAGACTTGAAAAGGATTAATGAAGAGCCAGTACTTGACATTGAAGCTTTAGATGGTGATCGGGGTTTCACCTCATCTAACCTTGCTGCTTTCCAGCTTTCCATGGATCACAGCACCTGTGTTGATGAGGAAGTTCAGAGAATCAAAACTGAACATCCTGATGATGCTGGTGCTGTGTTGAACGATCGTGTAAAAGGCTCATTGAAGGTCACTCGGGCATTCGGTGCTGGTTTCCTCAAACAGCCTAAATGGAACAATGCACTGTTGGAGATGTTCAGAATCGACTACGTCGGGAGATCGCCATACATCAATTGTCTACCATTTCTCTACCACCACAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCAGATGGACTCTACCAGTACTTCACAAACGAAGAAGCTGTTTCTGAAGTTGAACTTTTCATCACATTGCAACCCGAAGGAGACCCGGCTCAACATCTGGTTGAACTACTGTTGTTTCGGGCTGCAAAGAGAGCTGGTATGGACTTCCATGAGCTACTCGAAATACCCCAGGGTGACCGAAGGAAGTACCACGACGATGTATCGATCATTGTAATTTCATTAGAAGGGAGGATTTGGAGATCATGTGTATAA 2088 46.17 MGNGIGKLGVCFTGINDGGRRRPYVSVDEGLGHSFCYVRPDPSKVHSEETTTFRSISGASVSANTSTPLSTALLRLYSYNSVDPSAAFESSNSFASIPLQPIPRNTINSGPISGHFTEIHCSGSLERGFLSGPIERGFMSGPVDNSASSEFQRSFSHGGGFNPRSKSRKTRLIRVLKSAILKSVFRGQSSTVAPIKAVVKEHDWIVMPEKHNENLTVSSLNFSSEGSLEDDNSMKSQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKLNSPVVVAPAVSPVQSENLCSETRDSLQVNDNDFGRNPVDQESHPCASGDGNYGSNSRRNRKGSRGKFRGATEKWEDNQMRWKCEWDRERLELDRRLKQQLDRSGLNDLRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYLMNVGDSRAVLAQKVEPDYWFRKIRQDLKRINEEPVLDIEALDGDRGFTSSNLAAFQLSMDHSTCVDEEVQRIKTEHPDDAGAVLNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPFLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6381665 6384761 + Sed0013804.1 Sed01g0880 700184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0880 695 SMART PP2C_4 232 684 IPR001932 -
Sed01g0880 695 ProSiteProfiles PPM-type phosphatase domain profile. 231 686 IPR001932 -
Sed01g0880 695 CDD PP2Cc 412 686 IPR001932 -
Sed01g0880 695 SUPERFAMILY PP2C-like 245 687 IPR036457 -
Sed01g0880 695 PANTHER PROTEIN PHOSPHATASE 2C 223 686 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed01g0880 695 Pfam Protein phosphatase 2C 518 636 IPR001932 -
Sed01g0880 695 Pfam Protein phosphatase 2C 415 477 IPR001932 -
Sed01g0880 695 Gene3D - 206 691 IPR036457 -
Sed01g0880 695 Coils Coil 417 437 - -
Sed01g0880 695 FunFam probable protein phosphatase 2C 4 206 691 - -
Sed01g0880 695 MobiDBLite consensus disorder prediction 335 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0880 Sed-Chr1:6381665 Sed01g0882 Sed-Chr1:6381665 4.60E-298 dispersed
Sed01g0880 Sed-Chr1:6381665 Sed01g0881 Sed-Chr1:6381665 0.00E+00 tandem
Sed01g0880 Sed-Chr1:6381665 Sed05g2962 Sed-Chr5:40379294 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0880 - - - 0.0