Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0881 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACCGGAATCAACGACGGTGGGCGGCGGCGGCCATATGTTTCCGTCGATGAAGGGCTTGGCCATTCGTTCTGCTACGTCCGGCCGGATCCATCTAAAGTTCATTCCGAAGAAACCACCACTTTCCGGTCAATTTCCGGCGCCTCTGTAAGCGCCAACACCTCCACGCCTCTGTCTACGGCTCTCCTTCGTCTCTATTCCTACAATTCCGTTGATCCATCCGCCGCTTTCGAGAGTTCCAATTCCTTCGCTTCAATCCCTTTGCAGCCCATCCCCAGAAATACGATCAATTCCGGTCCCATTTCGGGTCATTTCACCGAAATCCATTGTTCCGGTTCTTTGGAAAGAGGGTTTTTGTCGGGTCCGATTGAGCGAGGGTTCATGTCCGGTCCGGTCGACAATTCCGCATCGAGTGAGTTTCAGAGAAGTTTCTCTCATGGAGGAGGGTTTAATCCCAGATCTAAATCGAGGAAAACCCGGTTGATTCGGGTTTTGAAAAGCGCGATTTTGAAGTCGGTTTTTCGTGGGCAGAGTTCCACTGTGGCTCCGATTAAAGCGGTTGTTAAAGAACATGATTGGATTGTGATGCCTGAAAAGCACAATGAGAATTTGACTGTGAGTAGTTTGAATTTTAGCAGTGAGGGAAGTTTGGAAGATGATAATTCAATGAAGAGCCAAAATCTGCAGTGGGCTCAAGGGAAAGCAGGGGAAGATCGAGTTCATGTTGTTGTTTCTGAAGAACATGGCTGGGTTTTTGTTGGGATTTATGATGGATTTAACGGCCCTGATGCTCCGGATTATCTTTTGTCGAATTTGTATTCATCTGTTCATAAAGAGCTCAAAGGTTTGTTGTGGGACGAAAAGCTCAATTCGCCCGTGGTGGTTGCCCCGGCCGTTTCCCCTGTTCAATCTGAGAATCTTTGTTCAGAAACAAGAGATTCTCTTCAGGTTAATGACAATGATTTTGGGAGGAATCCAGTTGATCAAGAGAGTCATCCTTGTGCTAGCGGAGATGGGAATTATGGATCGAATTCGAGACGGAACCGTAAGGGTTCAAGAGGAAAGTTTAGAGGAGCTACTGAGAAGTGGGAGGATAATCAGATGCGTTGGAAGTGCGAATGGGACCGAGAACGATTAGAGCTTGATCGGAGGTTAAAACAGCAGTTGGATCGATCTGGGTTGAACGATTTGAGGTCGATTAATCATTCGGATGTTTTGAAAGCTTTGTCCCAGGCATTGAAGAAAACTGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTGATGCTTATGAAGGGAGATGATGTTTATTTGATGAACGTTGGTGATAGCCGAGCTGTTTTAGCGCAGAAGGTGGAGCCCGATTATTGGTTCAGGAAGATTCGACAAGACTTGAAAAGGATTAATGAAGAGCCAGTACTTGACATTGAAGCTTTAGATGGTGATCGGGGTTTCACCTCATCTAACCTTGCTGCTTTCCAGCTTTCCATGGATCACAGCACCTGTGTTGATGAGGAAGTTCAGAGAATCAAAACTGAACATCCTGATGATGCTGGTGCTGTGTTGAACGATCGTGTAAAAGGCTCATTGAAGGTCACTCGGGCATTCGGTGCTGGTTTCCTCAAACAGCCTAAATGGAACAATGCACTGTTGGAGATGTTCAGAATCGACTACGTCGGGAGATCGCCATACATCAATTGTCTACCATTTCTCTACCACCACAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCAGATGGACTCTACCAGTACTTCACAAACGAAGAAGCTGTTTCTGAAGTTGAACTTTTCATCACATTGCAACCCGAAGGAGACCCGGCTCAACATCTGGTTGAACTACTGTTGTTTCGGGCTGCAAAGAGAGCTGGTACGAAACGACACCCACCCTAA 1995 46.42 MGNGIGKLGVCFTGINDGGRRRPYVSVDEGLGHSFCYVRPDPSKVHSEETTTFRSISGASVSANTSTPLSTALLRLYSYNSVDPSAAFESSNSFASIPLQPIPRNTINSGPISGHFTEIHCSGSLERGFLSGPIERGFMSGPVDNSASSEFQRSFSHGGGFNPRSKSRKTRLIRVLKSAILKSVFRGQSSTVAPIKAVVKEHDWIVMPEKHNENLTVSSLNFSSEGSLEDDNSMKSQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKLNSPVVVAPAVSPVQSENLCSETRDSLQVNDNDFGRNPVDQESHPCASGDGNYGSNSRRNRKGSRGKFRGATEKWEDNQMRWKCEWDRERLELDRRLKQQLDRSGLNDLRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYLMNVGDSRAVLAQKVEPDYWFRKIRQDLKRINEEPVLDIEALDGDRGFTSSNLAAFQLSMDHSTCVDEEVQRIKTEHPDDAGAVLNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPFLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLVELLLFRAAKRAGTKRHPP 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6381665 6384405 + Sed0013804.2 Sed01g0881 700185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0881 664 PANTHER PROTEIN PHOSPHATASE 2C 223 630 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed01g0881 664 ProSiteProfiles PPM-type phosphatase domain profile. 231 664 IPR001932 -
Sed01g0881 664 SUPERFAMILY PP2C-like 245 654 IPR036457 -
Sed01g0881 664 CDD PP2Cc 412 650 IPR001932 -
Sed01g0881 664 Gene3D - 206 662 IPR036457 -
Sed01g0881 664 Coils Coil 417 437 - -
Sed01g0881 664 Pfam Protein phosphatase 2C 518 637 IPR001932 -
Sed01g0881 664 Pfam Protein phosphatase 2C 415 477 IPR001932 -
Sed01g0881 664 SMART PP2C_4 232 652 IPR001932 -
Sed01g0881 664 MobiDBLite consensus disorder prediction 335 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0881 Sed-Chr1:6381665 Sed05g2962 Sed-Chr5:40379294 3.90E-286 dispersed
Sed01g0880 Sed-Chr1:6381665 Sed01g0881 Sed-Chr1:6381665 0.00E+00 tandem
Sed01g0881 Sed-Chr1:6381665 Sed01g0882 Sed-Chr1:6381665 4.40E-298 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0881 - - - 0.0