Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0902 ATGGACGACTTCTTAGACAATATACCGCCCATGGATCTGATGCGTTCCGAGAAGATGACCTTTGTTCAGCTCATCATCCCCGTCGAGTCCGCTCATCGATCCATTTCCTACCTTGGCGAGCTTGGCATCCTTCAATTCAAAGATCTAAACGTGGACAAAAGTCCTTTTCAGAGAACCTTTGTTAACCAGGTTAAGCGATGTGCAGAGATGTCAAGGAAGTTGAAATTTTTCAAAGTTCAAATCAGTAAAGCTGGTGTTCTGGCATCTACCCAACCAATTGTTCAAGAACATATTGAGCTAGAGGATTTAGAGATCCGGCTAGCTGATCATGAACACGAGCTGATTGAAATGAACTCTAACAGTGAAAAACTTCAACAGTCATATAATGAACTCTTAGAGTTCAAGATGGTAATGCAAAAGGCAAGTGTCTTTCTGGTGTCCGGCCATAGCCATTCAGTTTCAGAAGAAAGGGAGCTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAGCCAATCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGCAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGATCCAATATCCATGGAAATGGTTGATAAAACAGTGTTTGTAGTTTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATATGTGAAGCTTTTGGAGCAAATTGCTACCCTGTTCCTGAAGATATAACCAAACAGAGGCAGATAACTAGAGAAGTTTCATCTCGCCTCACTGATCTTGAAGCAACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGGATTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACATTGAACATGTTGAACTTTGATGTAACTAAAAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATATTTGCTAAAATTCAGATTCAAGAGGCACTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGCACGATATTTCATGTGATGGATACGGTTGAATCCCCCCCTACATATTTTAGAACTAACCGTTTGACAAGTGCTTTTCAAGAAATTGTTGATGCCTATGGTGTTGCTAAATATCAAGAGGCAAATCCTGCAGTTTACACTGTTATTACATTTCCGTTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTATTTCTTCTAGCTCGTGAAAGTAAGCTGAATAACCAGAAATTAGGAAGTTTTATGGAGATGCTATTTGGTGGACGCTACGTTCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTTTCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACACTGTTGGGCTAGTTAAATACAGTGATCCTTATGCATTTGGTGTTGACCCGAGTTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAATTCTCTTAAAATGAAGATGTCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCACGTTTTACTGGAAGCTCACTTGATATCAGGTATCAGTTTGTACCACAAGTGATCTTTCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATTAAGTGGTGCACTGGATCTCAAGCAGACCTCTACCATGTGATGATTTACATGTTCTTAAGCCCATTTGATGATCTTGGCGAGAACGAATTGTTTTGGGGCCAAAGACCTCTACAAGTTATCTTGTTGATATTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATGTACGCAGAGAGATTTCAAGGTCGTACTTATGGAATGCTTGGAACCTCTGAGGTAGATCTTGAGGTTGAACCCGATTCGGCAAGGCAACACCAGGAGGACTTCAATTTTAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATCGAATTCGTCTTGGGTGCAGTTTCAAACACAGCATCATATCTCCGACTTTGGGCTTTAAGCTTGGCGCATTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTGGTTATCCGGCTGATTGGTTTAGCTGTTTTTTCCTTTGCCACTGCTTTCATACTTCTTATGATGGAGTCCCTTAGTGCCTTCCTTCATGCCTTGCGTCTTCATTGGGTTGAGTTTCAAAATAAATTCTACCATGGTGATGGCTACAAATTCAAACCTTTTTCCTTCGCCTCTATTGATGATGATGAAGATTAA 2460 40.28 MDDFLDNIPPMDLMRSEKMTFVQLIIPVESAHRSISYLGELGILQFKDLNVDKSPFQRTFVNQVKRCAEMSRKLKFFKVQISKAGVLASTQPIVQEHIELEDLEIRLADHEHELIEMNSNSEKLQQSYNELLEFKMVMQKASVFLVSGHSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSSQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISMEMVDKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTDLEATLDAGIRHRNEALASIGIHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKIQIQEALQRATFDSSSQVGTIFHVMDTVESPPTYFRTNRLTSAFQEIVDAYGVAKYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLLARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGASAYKCRDNSCSDAHTVGLVKYSDPYAFGVDPSWRGSRSELPFLNSLKMKMSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQVILLILAIVAVPWMLFPKPFILKKMYAERFQGRTYGMLGTSEVDLEVEPDSARQHQEDFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSLVIRLIGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASIDDDED 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6518136 6533925 + Sed0004023.1 Sed01g0902 700206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0902 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Sed01g0902 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed01g0902 819 PANTHER VACUOLAR PROTON ATPASES 11 817 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Sed01g0902 819 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0902 Sed-Chr1:6518136 Sed03g1719 Sed-Chr3:11211976 5.80E-300 dispersed
Sed01g0902 Sed-Chr1:6518136 Sed01g0903 Sed-Chr1:6518136 0.00E+00 tandem
Sed01g0902 Sed-Chr1:6518136 Sed05g2892 Sed-Chr5:39910454 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0902 K02154 - csv:101216514 1556.19