Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0903 ATGGACGACTTCTTAGACAATATACCGCCCATGGATCTGATGCGTTCCGAGAAGATGACCTTTGTTCAGCTCATCATCCCCGTCGAGTCCGCTCATCGATCCATTTCCTACCTTGGCGAGCTTGGCATCCTTCAATTCAAAGATCTAAACGTGGACAAAAGTCCTTTTCAGAGAACCTTTGTTAACCAGGTTAAGCGATGTGCAGAGATGTCAAGGAAGTTGAAATTTTTCAAAGTTCAAATCAGTAAAGCTGGTGTTCTGGCATCTACCCAACCAATTGTTCAAGAACATATTGAGCTAGAGGATTTAGAGATCCGGCTAGCTGATCATGAACACGAGCTGATTGAAATGAACTCTAACAGTGAAAAACTTCAACAGTCATATAATGAACTCTTAGAGTTCAAGATGGTAATGCAAAAGGCAAGTGTCTTTCTGGTGTCCGGCCATAGCCATTCAGTTTCAGAAGAAAGGGAGCTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAGCCAATCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGCAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGATCCAATATCCATGGAAATGGTTGATAAAACAGTGTTTGTAGTTTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATATGTGAAGCTTTTGGAGCAAATTGCTACCCTGTTCCTGAAGATATAACCAAACAGAGGCAGATAACTAGAGAAGTTTCATCTCGCCTCACTGATCTTGAAGCAACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGGATTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACATTGAACATGTTGAACTTTGATGTAACTAAAAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATATTTGCTAAAATTCAGATTCAAGAGGCACTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGCACGATATTTCATGTGATGGATACGGTTGAATCCCCCCCTACATATTTTAGAACTAACCGTTTGACAAGTGCTTTTCAAGAAATTGTTGATGCCTATGGTGTTGCTAAATATCAAGAGGCAAATCCTGCAGTTTACACTGTTATTACATTTCCGTTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTATTTCTTCTAGCTCGTGAAAGTAAGCTGAATAACCAGAAATTAGGAAGTTTTATGGAGATGCTATTTGGTGGACGCTACGTTCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTTTCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACACTGTTGGGCTAGTTAAATACAGTGATCCTTATGCATTTGGTGTTGACCCGAGTTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAATTCTCTTAAAATGAAGATGTCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCACGTTTTACTGGAAGCTCACTTGATATCAGGTCTCTACTTTCTCATTTTGTTTATCGCGTTTGTTCTTCGTTTGAAATGAATATCTGTCGCACCTTAAAAAGAAACTCTCTATGTTACATTATCAGGTATCAGTTTGTACCACAAGTGATCTTTCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATTAAGTGGTGCACTGGATCTCAAGCAGACCTCTACCATGTGATGATTTACATGTTCTTAAGCCCATTTGATGATCTTGGCGAGAACGAATTGTTTTGGGGCCAAAGACCTCTACAAGTTATCTTGTTGATATTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATGTACGCAGAGAGATTTCAAGGTCGTACTTATGGAATGCTTGGAACCTCTGAGGTAGATCTTGAGGTTGAACCCGATTCGGCAAGGCAACACCAGGAGGACTTCAATTTTAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATCGAATTCGTCTTGGGTGCAGTTTCAAACACAGCATCATATCTCCGACTTTGGGCTTTAAGCTTGGCGCATTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTGGTTATCCGGCTGATTGGTTTAGCTGTTTTTTCCTTTGCCACTGCTTTCATACTTCTTATGATGGAGTCCCTTAGTGCCTTCCTTCATGCCTTGCGTCTTCATTGGGTTGAGTTTCAAAATAAATTCTACCATGGTGATGGCTACAAATTCAAACCTTTTTCCTTCGCCTCTATTGATGATGATGAAGATTAA 2556 40.02 MDDFLDNIPPMDLMRSEKMTFVQLIIPVESAHRSISYLGELGILQFKDLNVDKSPFQRTFVNQVKRCAEMSRKLKFFKVQISKAGVLASTQPIVQEHIELEDLEIRLADHEHELIEMNSNSEKLQQSYNELLEFKMVMQKASVFLVSGHSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSSQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISMEMVDKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTDLEATLDAGIRHRNEALASIGIHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKIQIQEALQRATFDSSSQVGTIFHVMDTVESPPTYFRTNRLTSAFQEIVDAYGVAKYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLLARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGASAYKCRDNSCSDAHTVGLVKYSDPYAFGVDPSWRGSRSELPFLNSLKMKMSILLGIAQMNLGIILSYFNARFTGSSLDIRSLLSHFVYRVCSSFEMNICRTLKRNSLCYIIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQVILLILAIVAVPWMLFPKPFILKKMYAERFQGRTYGMLGTSEVDLEVEPDSARQHQEDFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSLVIRLIGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASIDDDED 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6518136 6533925 + Sed0004023.2 Sed01g0903 700207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0903 851 PANTHER VACUOLAR PROTON ATPASES 11 578 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Sed01g0903 851 PIRSF ATP6V0A1 585 851 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Sed01g0903 851 PIRSF ATP6V0A1 9 601 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Sed01g0903 851 Pfam V-type ATPase 116kDa subunit family 37 577 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed01g0903 851 Pfam V-type ATPase 116kDa subunit family 595 843 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed01g0903 851 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0903 Sed-Chr1:6518136 Sed05g2892 Sed-Chr5:39910454 0.00E+00 dispersed
Sed01g0902 Sed-Chr1:6518136 Sed01g0903 Sed-Chr1:6518136 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0903 K02154 - csv:101216514 1539.63