Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0912 ATGGAAGCGTTGGAAAAAGCAGTACCAAAGTCCTCCCCTTTGGTGCCCTTTCCTCGGCACTCCAGAGGATGGCTCGAGGTTTTCAACCCCTCGGCCAGTAACACCGTTTCTCGGGCGGACGAAGTGGGGTCTGCTGCCCTACGCGCGGCCGAGTGGGGATTGGTACTGAAAACGGATACGGATACAGGGAAGCTGCAGGGGGTCGGAGTTCGAACTTCGAATAACTCGGTGCGGAGTTCGGGTGACATGTTGGACGATGGGGCGGGCGAAAGGGGGATTCCGAGAGTCTCCAAGGACTTGAAGGATGCTCTGTCCGCATTTCAACAAACATTTGTGGTTTCTGATGCTACCAAACCTGACTATCCGATTATGTATGCGAGTGCTGGATTCTTCAACATGACTGGCTATACATCCAAGGAGGTTATCGGAAGAAATTGTCGATTCTTACAGGGTGCAGATACCGACCCAGAAGATGTGGCCAAGATACGAGAGGCTTTACGAGCCGGTACAAGTTACTGTGGGAGGCTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAATTTACTTACTATTTCACCTATCAAAGATGATGATTCCATGGTTCTCAAATTTATTGGGATGCAAGTGGAGGTGAGCAAACACACAGAGGGGTTCAAAGAAAAGACGGTCCGGCCCAATGGCTTGCCAGAATCCTTGATTCGATATGATGCCCGTCAAAAAGAGATGGCTAAGAGTTGGGTAAGAGAGATTGTGGAGGCAGTGAAAAGGCCTGGTGGGTATGTTAGAAAATGGGAGCAATATGGTTTAATTGAAGCTCCAAAATTGGTTAGGCGAAATTCAGAGAGTGCAACCACAGCTTCTAGTGGACGAAAATTATTGTATGGAGGAGGAAGTACAAGGTCCATGCACCCTATCACTGAGTTGCCAAAGACCAAACCCAATAAGTTTACCCGTCCTTCAACATTTATGGGGATGATGAGGAAGAGCCAATCAAATATTGAAAGCTTTGATATTGAAGATGGTTCCGATGATGATAATGAGATCGATGACGATGAGAAACGAGCTAGTGTCGACAGCAAAGTAAGGCAGAGGGAAATGAGGAAAGGTATCGATTTGGCAACTACCCTCGAACGTATAGAGAAGAACTTTGTCATTACGGATCCGAGGTTGCCTGACAATCCCATTATATTTGCTTCTGATAGCTTCCTTGAGCTAACTGAGTACAGCAGAGAAGAAATCTTGGGAAGAAATTGCAGATTTCTGCAAGGTCCTGAAACCGATCGAGCAACTGTCAAGAAAATAAGAGATGCAATCGACAACCAAACCGAAGTTACGGTGCAACTTATTAACTACACGAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGATCAAAAGGGAGAAGTCCAGTATTTTATCGGAGTTCAACTCGACGGTAGTCATCACGTGGAGCCACTAACCAACTGCATACCGGAAAATACTGCAAAAGAGGGCGAAAAAATGATAAAAGAAACTGCAGAACATGTTGGTTCGGCGGCTAGAGAACTTCCCGATGCCAATTCGACACCAGAAGATTTATGGGCAAATCATTCTAAGGTGGTTATACCAAAACCTCACAGAAAGGATAGCCCTTCTTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACCGATAGGACTGAAACATTTCAGACCAGTTAAACCTTTGGGATCAGGTGATACTGGCAGAGTGCATTTGGTAGAACTATGCGGGACTGATCAGTATTTTGCAATGAAGGCAATGGATAAGAGTGCTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCTCTGAGAGGGAAATACTCGACATGCTGGACCATCCTTTTCTACCTGCATTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGTCCTGGTGGAGAACTCTTTCTTCTTTTGGAAAGACAACCTACAAAGGTCTTAAAGGAAGGTGCTGCAAGGTTTTATGCTGCTGAAGTTGTCGTCGCATTGGAGTATCTTCATTGTCAAGGGATAATCTATAGGGATCTTAAGCCTGAGAATGTTCTACTCCAAGGCAATGGACACATAGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGCAAACCTCAGCTTTTGCTTCCGACGACAAACGAGAAGAAAAAACAATCAAGATCTCAACAGGCTCCCGTCTTTATGGCCGAACCTATGCGAGCATCGAACTCATTTGTTGGCACCGAAGAGTACATAGCACCGGAAATTATTGCTGGGGCTGGCCATACAAGTGCAGTGGATTGGTGGGCTTTAGGTATCCTTCTATATGAGATGCTCTATGGATACACACCCTTTAGGGGGAAGGCAAGGCAAAAGACATTTTCCAACATTCTTGGAAAGGATCTTAAATTTCCCAAAAGTATATCGGTAAAGGTTTTTTTTTATCCGAGCAAAATATTTGTAGATCTAAACTTAGTTTAG 2517 44.58 MEALEKAVPKSSPLVPFPRHSRGWLEVFNPSASNTVSRADEVGSAALRAAEWGLVLKTDTDTGKLQGVGVRTSNNSVRSSGDMLDDGAGERGIPRVSKDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALRAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDSMVLKFIGMQVEVSKHTEGFKEKTVRPNGLPESLIRYDARQKEMAKSWVREIVEAVKRPGGYVRKWEQYGLIEAPKLVRRNSESATTASSGRKLLYGGGSTRSMHPITELPKTKPNKFTRPSTFMGMMRKSQSNIESFDIEDGSDDDNEIDDDEKRASVDSKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSHHVEPLTNCIPENTAKEGEKMIKETAEHVGSAARELPDANSTPEDLWANHSKVVIPKPHRKDSPSWKAIQKILDSGEPIGLKHFRPVKPLGSGDTGRVHLVELCGTDQYFAMKAMDKSAMLNRNKVHRACSEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLERQPTKVLKEGAARFYAAEVVVALEYLHCQGIIYRDLKPENVLLQGNGHIALTDFDLSCLTSCKPQLLLPTTNEKKKQSRSQQAPVFMAEPMRASNSFVGTEEYIAPEIIAGAGHTSAVDWWALGILLYEMLYGYTPFRGKARQKTFSNILGKDLKFPKSISVKVFFYPSKIFVDLNLV 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6597224 6608093 + Sed0014494.2 Sed01g0912 700216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0912 838 ProSiteProfiles PAS repeat profile. 96 167 IPR000014 -
Sed01g0912 838 MobiDBLite consensus disorder prediction 337 358 - -
Sed01g0912 838 PANTHER FLIPPASE KINASE 1-RELATED 505 821 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed01g0912 838 MobiDBLite consensus disorder prediction 279 318 - -
Sed01g0912 838 Gene3D PAS domain 110 258 - -
Sed01g0912 838 SMART serkin_6 570 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0912 838 NCBIfam PAS domain S-box protein 123 215 IPR000014 -
Sed01g0912 838 NCBIfam PAS domain S-box protein 394 484 IPR000014 -
Sed01g0912 838 FunFam Putative LOV domain-containing protein 110 266 - -
Sed01g0912 838 SUPERFAMILY PYP-like sensor domain (PAS domain) 385 484 IPR035965 -
Sed01g0912 838 Gene3D Phosphorylase Kinase; domain 1 569 653 - -
Sed01g0912 838 ProSiteProfiles Protein kinase domain profile. 570 838 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0912 838 FunFam LOV domain-containing protein 358 522 - -
Sed01g0912 838 ProSiteProfiles PAC domain profile. 170 224 IPR000700 -
Sed01g0912 838 ProSiteProfiles PAC domain profile. 443 497 IPR000700 -
Sed01g0912 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0912 838 ProSiteProfiles PAS repeat profile. 373 442 IPR000014 -
Sed01g0912 838 Pfam PAS domain 392 484 IPR000014 -
Sed01g0912 838 Pfam PAS domain 117 213 IPR000014 -
Sed01g0912 838 FunFam Probable serine/threonine-protein kinase cot-1 653 828 - -
Sed01g0912 838 MobiDBLite consensus disorder prediction 338 352 - -
Sed01g0912 838 SUPERFAMILY PYP-like sensor domain (PAS domain) 116 213 IPR035965 -
Sed01g0912 838 Gene3D PAS domain 357 522 - -
Sed01g0912 838 SUPERFAMILY Protein kinase-like (PK-like) 548 823 IPR011009 -
Sed01g0912 838 FunFam LOV domain-containing protein 569 653 - -
Sed01g0912 838 CDD PAS 123 212 IPR000014 -
Sed01g0912 838 ProSitePatterns Protein kinases ATP-binding region signature. 576 599 IPR017441 GO:0005524(InterPro)
Sed01g0912 838 Gene3D Transferase(Phosphotransferase) domain 1 654 823 - -
Sed01g0912 838 CDD PAS 384 484 IPR000014 -
Sed01g0912 838 SMART pac_2 446 488 IPR001610 -
Sed01g0912 838 SMART pac_2 173 215 IPR001610 -
Sed01g0912 838 SMART pas_2 98 167 IPR000014 -
Sed01g0912 838 SMART pas_2 371 440 IPR000014 -
Sed01g0912 838 MobiDBLite consensus disorder prediction 279 295 - -
Sed01g0912 838 Pfam Protein kinase domain 573 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0912 838 CDD STKc_phototropin_like 568 822 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0912 Sed-Chr1:6597224 Sed05g2908 Sed-Chr5:40036313 0.00E+00 dispersed
Sed01g0911 Sed-Chr1:6597224 Sed01g0912 Sed-Chr1:6597224 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78577 PF00069 Pkinase 1.20E-55 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0912 K20715 - csv:101214662 1293.87