Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0934 ATGATCCTTGAGCGGCTGATCATGGTGGTGATATCAATTTGTGCAGTAGCTTCATCAGCAGCCTCAAATATTGGCTATCCAGCCTTACCCAATTGCAAAAATAAATGCGGAAACTTGACGATTCCTTATCCGTTCGGAATGAGCGAAGAATGTTATCTCAATACGAATTTCTCCGTAACCTGCAACACAACTCATTACCATCCTCCCCAGGCATTTGTGATGGATAGCAACATTATGAAGTCATGTATAAGAATTTCTCCTCTCCTAAACCCATTAATTTTGTGTATCTCTTTCACTATACCAGAGGTGAATGGGTGCTGTCAGCTGGAGATTCCTAAAGGGCTGAAGTACGTGGAGTACAAGGTGAGGAGCTTCAAAAATCACAGTGAGGTATTGGAGTTCAATCCTTGCGGGTATGGTTTTGTAAATGAACAAAACAACTTCACTTTCTCTTCTTCCTATATTGCCCATTTTACACAACAAATGGTTCCTTTGGTGCTTGACTGGGGCATCAAAAAGAACGATACTTGTTCGAAAAACGACGAGACCGGTTGCAGCGTATGCGGACCAAACACTAGAATAATTAGCGACTTCTCCATTGATGGATCTGAATATCACTGCGAGTGCTTAGATGGTTTCGAGGGCATCCAAGGAAATCCATATCTCGGTTGTCAAAATATAAATGAATGCGAGGGAAAGCATGATTGTGTTGACATAAAGCACTGTAAGGACACAAATGGAAGCTATGTTTGTTACTGTCCAAAAGGCCATGGAGATGGAAAGCTCGGCGGACTCCGTTGCACTTCAAACCCTCTTTCCCCCATTCGCATCATCGTTGGAATCGGTGTGGGCTTCATAGTTTTGCTGATTGGCTGTACATGGATATACATAGTATACAAAAAGTGGAAATTCATCCAAAGAAAAAATAAGTTTTTCGAGAACAATGGAGGCTTCTTACTTAAGCAACATCTTTCCCAACTACAAACGGACAGTACCGTTAGAATTTTCTCCCAAGAAGAGCTGGAAAAGGCTACCAACAAGTTCGACGAAAGCGCGGTGGTTGGAAAAGGCGGTTACGGCACCGTTTACAAAGGAGTCTTCGACGACGGTTTGGTAGTCGCTATTAAGAAATCAAAGCTAGTGGACCAATCCCAAACGGACCAATTCATAAACGAAGTCCTTGTTTTGTCCCAAATCAACCACCGAAATGTGGTCAAGCTAATTGGGTGTTGTTTGGAAACAGAAGTTCCATTGCTTGTCTATGAGTTCATCTCCAATGGAACACTCTTTGATCACATCCATGACAAATCCAAGTACCCTTCTCTTTCGTGGGAAGCTCGTTTGAAAATCGCTTCTCAAACCGCAGGGGTACTTTCGTATTTGCACTCCTCTGCTCAAACTCCTATCATCCATAGAGATATCAAGCCAACTAATATACTCTTGGACCATAATTACACCGCAAAAGTTTCCGACTTTGGCGTTTCAAAGTTGGTTCCTTTGGACAAAACTCAGCTATCCACCATGGTGCAGGGGACTCTTGGATATTTGGATCCTGAATACTTGATGACAAGCGAGTTGACAGAAAAGAGTGATGTATATAGCTTTGGGATTGTGCTTCTCGAGCTAATAACAGGGAAGAAGGCAGTGCGTTTCGATGGACCAGAAGTAGAGAGAAACCTAGCCATGTATGCACTATGGGCGATGAAAGAGGATCGTGTCGAGGAGGTTGTCGAGGAAGGAATGGGAAGGGAAGAAAACTTAAAGGAAATAAAAGAAGTGGCAAAGCTAGCAAAGGTGTGTTTGAAATTAAAGGGGGAAGAGAGACCAAGCATGAAGGAGGTAGCAATGGAGTTGGAAGGACTTAGACAGATGCAGATTAAGCATTCATGGGCCAATAACAACTTATCCAATGAAGAAGAGATGACATGTTTGCTAGATGGTGCTTCAAATTCAAGCTCTTTTGTTGTCAATACCACTATGAATAATACCATGGACTACAGCATAAGTGCTCAAATTTTGTCACCTGTTCCTGATGGAAGATGA 2043 42.49 MILERLIMVVISICAVASSAASNIGYPALPNCKNKCGNLTIPYPFGMSEECYLNTNFSVTCNTTHYHPPQAFVMDSNIMKSCIRISPLLNPLILCISFTIPEVNGCCQLEIPKGLKYVEYKVRSFKNHSEVLEFNPCGYGFVNEQNNFTFSSSYIAHFTQQMVPLVLDWGIKKNDTCSKNDETGCSVCGPNTRIISDFSIDGSEYHCECLDGFEGIQGNPYLGCQNINECEGKHDCVDIKHCKDTNGSYVCYCPKGHGDGKLGGLRCTSNPLSPIRIIVGIGVGFIVLLIGCTWIYIVYKKWKFIQRKNKFFENNGGFLLKQHLSQLQTDSTVRIFSQEELEKATNKFDESAVVGKGGYGTVYKGVFDDGLVVAIKKSKLVDQSQTDQFINEVLVLSQINHRNVVKLIGCCLETEVPLLVYEFISNGTLFDHIHDKSKYPSLSWEARLKIASQTAGVLSYLHSSAQTPIIHRDIKPTNILLDHNYTAKVSDFGVSKLVPLDKTQLSTMVQGTLGYLDPEYLMTSELTEKSDVYSFGIVLLELITGKKAVRFDGPEVERNLAMYALWAMKEDRVEEVVEEGMGREENLKEIKEVAKLAKVCLKLKGEERPSMKEVAMELEGLRQMQIKHSWANNNLSNEEEMTCLLDGASNSSSFVVNTTMNNTMDYSISAQILSPVPDGR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6757701 6769407 - Sed0015803.1 Sed01g0934 700238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0934 680 ProSiteProfiles EGF-like domain profile. 226 268 IPR000742 -
Sed01g0934 680 SUPERFAMILY EGF/Laminin 226 257 - -
Sed01g0934 680 CDD STKc_IRAK 354 621 - -
Sed01g0934 680 Pfam Protein kinase domain 350 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0934 680 SMART serkin_6 348 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0934 680 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 632 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed01g0934 680 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524(InterPro)
Sed01g0934 680 ProSiteProfiles Protein kinase domain profile. 348 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0934 680 FunFam Wall-associated receptor kinase 2 424 642 - -
Sed01g0934 680 Gene3D Transferase(Phosphotransferase) domain 1 424 643 - -
Sed01g0934 680 ProSitePatterns Calcium-binding EGF-like domain signature. 226 251 IPR018097 GO:0005509(InterPro)
Sed01g0934 680 CDD EGF_CA 226 257 - -
Sed01g0934 680 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 242 253 IPR000152 -
Sed01g0934 680 Gene3D Phosphorylase Kinase; domain 1 320 423 - -
Sed01g0934 680 Gene3D Laminin 172 261 - -
Sed01g0934 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0934 680 SMART egfca_6 226 268 IPR001881 GO:0005509(InterPro)
Sed01g0934 680 SUPERFAMILY Protein kinase-like (PK-like) 326 618 IPR011009 -
Sed01g0934 680 FunFam Wall-associated receptor kinase 2 319 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0934 Sed-Chr1:6757701 Sed01g0936 Sed-Chr1:6797387 1.60E-239 dispersed
Sed06g0755 Sed-Chr6:7885959 Sed01g0934 Sed-Chr1:6757701 2.30E-50 dispersed
Sed01g0934 Sed-Chr1:6757701 Sed01g0935 Sed-Chr1:6772169 6.60E-241 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78579 PF00069 Pkinase 5.90E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0934 - - - 0.0