Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0935 ATGCTTAATGTGCGAGTGATGATGATGATAGCCATTTTGATAGTGGGTGCAGCAGAAGCAGCAGCAGAATCATCAATTGGCTATCCAGCCTTACCCAATTGCACAAATAAATGTGGAAGCTTGACAATTCCTTATCCGTTCGGGATGAGCAAAGAATGCTATCTCCATACAAATTTCTCCATAACCTGCAACACAACTCATTACAATCCTCCGCAGGCATTTCTGAGGAGAAGCAACATTATGGTTACAAATATATCCTTCCTCGACGGGGAGCTCGACATATTGCAGTACACGGCCCAAGATTGTTACACAAAAGATGGCGACAGAAACTCCAACAGCCCCTGGCTCAGGGTGCCCATGTTCACAATATCCAGCACGAGGAACAAGTTCATAGTCATTGGCTGCGATACTTACTCTTATATTTCTGGCCAACTCATGGGCACCACATATACAAGTGGGTGTATGGCTTTGTGTGAAAATAATTTAACTCTCAGAGATGGAGCCTGCTCTGGCAATGGATGCTGTCAGTTGGAGATTCCCCCAGGCCTTCAAAATTTAAACGTGACAGTCAAAAGCTTCTATAATCACAAATTTGTACAGGACTTCAACCCTTGTGGCTATGCTTTTGTAATCGAACAATCCAACTTCAGTTTTTCCAAAACCTATATTCAAAATTTTACCCAACGGTCTGTTCCTCTGGTGCTTGATTGGACCATAAATGCTGACGATATATGCGGACCAAACACCGACAGGACTAACTATCCCGATGATTATGGATCTCAATATCGTTGCCACTGCTTGCAAGGCTTTCAGGGGAATCCATATCTTCCCCAAGGTTGTCAAGATATCAACGAATGCGAAACCGGAAGTCATGAGTGTGGATCGAAAGATTGGTGTGTTAACAAACAAGGATACCATACTTGCATTTGTCCCAACAACTATCACGGAGATGGCAAAATGAACGGGAAAGGTTGCACCCCAAATTCCAAGTCTTTTCTTTCCATCATTATTGGAATTGCGGTGGGGCTCGTAGTTTTACTGATCGGTAGCTCATGGCTGTACTTGGGTTACAAAAAGTGGAAGTTCATCCAAAAGAAAGAGAAGTTTTTCAAGAATAATGGAGGCTTAATACTTCAACAACACCTTTCTCAGTGGCAATCACCTGTTGACTCGGTCAAAATATTCAGCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTTCGATGATAGCACAGTGGTCGGAACAGGTGGCTATGGCACTGTTCACAAAGGAGTGTTAGAGGGTGGATCGGTTGTGGCCATTAAGAAATCAAAATTAGTGGACCAATCCCAAATTGACCAATTTATCAACGAAGTCATCATTCTGTCACAAATCAACCATCGACACGTGGTGCGACTCTTAGGATGTTGTTTGGAGACGCAAGTTCCATTGTTGGTGTACGAGTTCATCACCAATGGCACACTCTTCGACCACATCCACAACAATTCCCTTTCTTGGGAAGCTCGCTTGAAAATTGCTTCAGAAACTGCAGGCGTGATTTCTTATTTACATTCTTCAGCTTCCACTCCAATCATCCACAGAGATATTAAGTCCACTAATATACTTTTGGATGCTAATCTTACTGCAAAAGTCTCTGACTTTGGTGCTTCAAAGTTGGTTCCAACGGATCAAAATCAGCTATCTACCATGGTACAAGGGACTCTTGGATATTTGGATCCTGAATATTTGTTGACGAGCGAGTTGACAGAAAAGAGTGACGTGTATAGCTTTGGAATTGTGCTTTTAGAGCTTCTAACAGGCAAGAAGGCGGTGCGTTTTGATGGACCGGAAGCAGAGAGAAACCTGGCCATGTACGTTCTTTGTGCGATGAAAGAAGGTCGGTTGGTAGAAGTTGTGGACAAAAGAATGGCAATAGGAAGAAACTTTGATCAGATAAAAGAAGTGGCCAAACTAGCAAAAGAGTGTGTGAAAGTAAAAGGGGAGGAGAGACCAAGCATGAAGGAAGTAGCAATGGAGTTGGAGGGACTGAGAGTGATGCAGGTTGAACATTCATGGAATAATGAGAACAATTTGAACAGAGAAGAGACTGTAAATTTGTTGGATGGAGATTCACAGTCCACCCAATTATTTGTTGTTAGTGGCAGTATCAATCCAATGGACAGTAGCATAAAAGCTCAGGTTTTGACACACATCCCAGATGCAAGATGA 2208 42.75 MLNVRVMMMIAILIVGAAEAAAESSIGYPALPNCTNKCGSLTIPYPFGMSKECYLHTNFSITCNTTHYNPPQAFLRRSNIMVTNISFLDGELDILQYTAQDCYTKDGDRNSNSPWLRVPMFTISSTRNKFIVIGCDTYSYISGQLMGTTYTSGCMALCENNLTLRDGACSGNGCCQLEIPPGLQNLNVTVKSFYNHKFVQDFNPCGYAFVIEQSNFSFSKTYIQNFTQRSVPLVLDWTINADDICGPNTDRTNYPDDYGSQYRCHCLQGFQGNPYLPQGCQDINECETGSHECGSKDWCVNKQGYHTCICPNNYHGDGKMNGKGCTPNSKSFLSIIIGIAVGLVVLLIGSSWLYLGYKKWKFIQKKEKFFKNNGGLILQQHLSQWQSPVDSVKIFSQEELEKATNKFDDSTVVGTGGYGTVHKGVLEGGSVVAIKKSKLVDQSQIDQFINEVIILSQINHRHVVRLLGCCLETQVPLLVYEFITNGTLFDHIHNNSLSWEARLKIASETAGVISYLHSSASTPIIHRDIKSTNILLDANLTAKVSDFGASKLVPTDQNQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELLTGKKAVRFDGPEAERNLAMYVLCAMKEGRLVEVVDKRMAIGRNFDQIKEVAKLAKECVKVKGEERPSMKEVAMELEGLRVMQVEHSWNNENNLNREETVNLLDGDSQSTQLFVVSGSINPMDSSIKAQVLTHIPDAR 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6772169 6774609 - Sed0024333.1 Sed01g0935 700239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0935 735 SMART serkin_6 407 676 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0935 735 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 687 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed01g0935 735 CDD STKc_IRAK 413 676 - -
Sed01g0935 735 FunFam Fibrillin 2 277 321 - -
Sed01g0935 735 Pfam Wall-associated receptor kinase galacturonan-binding 34 92 IPR025287 GO:0030247(InterPro)
Sed01g0935 735 Gene3D Transferase(Phosphotransferase) domain 1 483 699 - -
Sed01g0935 735 Pfam Protein kinase domain 409 669 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0935 735 CDD EGF_CA 282 317 - -
Sed01g0935 735 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Sed01g0935 735 SUPERFAMILY Protein kinase-like (PK-like) 385 674 IPR011009 -
Sed01g0935 735 FunFam Wall-associated receptor kinase 2 483 697 - -
Sed01g0935 735 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
Sed01g0935 735 Gene3D Laminin 239 325 - -
Sed01g0935 735 SMART egfca_6 282 326 IPR001881 GO:0005509(InterPro)
Sed01g0935 735 SUPERFAMILY EGF/Laminin 281 317 - -
Sed01g0935 735 FunFam Wall-associated receptor kinase 2 377 482 - -
Sed01g0935 735 Pfam Calcium-binding EGF domain 282 319 IPR049883 -
Sed01g0935 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0935 735 ProSiteProfiles Protein kinase domain profile. 407 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0935 Sed-Chr1:6772169 Sed01g0940 Sed-Chr1:6879504 0.00E+00 dispersed
Sed01g0934 Sed-Chr1:6757701 Sed01g0935 Sed-Chr1:6772169 6.60E-241 tandem
Sed01g0935 Sed-Chr1:6772169 Sed01g0936 Sed-Chr1:6797387 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78580 PF00069 Pkinase 2.00E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0935 - - - 0.0