Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0936 ATGATGCTTCGTGTGCGATTGATGCTAGCCATTTTGGCAGTGGCTGCAGCAGCATCGGCCTCCTCATCGATCGATAGTCCAGTTGCCAAACACGATTGCGAGCACAAATGTGGAAACGTGACGATTCCTTATCCGTTCGGGACGCGCGATGGATGTTATCTGAATTCAAATTTCAGCATCACGTGCAACGAAACTCATTACGATCCTCCGCAGGCATTTCTGATGAACGGTAACATTATGGTTACAGATATTTCGTATATCTCTGGGGAGCTCAGCATCTTGCACTCGGTGAGCCAAGTTTGCGAACCCGCTAGCAATGTTAGTACAGAACGTGAACTTGTGTACCCCTTCATTCCCAATTTACCTGCAGCGCCGCCCTTCACTGTTTCGAGTTCCAAAAACAGGTTCACTTTGGTCGGCTGTGAGACCATTGCTTTAATTGCGGATGGGCAAAACTTCGGCATAACTGGATGCTTTGCTACATGTGTTGATGCGAGCTTGGTGCAAGATGGGGTTTGCAATGGCAACGGTTGTTGTCAGTTTGATATCCCCAGTGGTCAAAACATGTCTGCAGCCACCTCGCCCCTCAACGCTACTGATAATAATGTCTCGGCCAGTTCAAACCATTGTGCGTATGCTTTTGTAAGTGATCAAGACAAGTTTCATTTCAAGAAATCGTATGTTAATCACAAATCTCCCGATATCGCGATTCCGGCCGTGCTTGAATGGAGCATCAGTAACACGACTTGCGACAAAAGTTCTAATTGTATATGTGGACCAAATAGCAACAAGGCTAGCTTTCTTCCTGATGGATCTCAATACCGTTGTCAGTGCTGGGATGGCTTTCAAGGGAATCCATATCTAGAAGCTTGTCAAGATATAAATGAATGCGAGAATGAATCCCATGGTTGTATATCAAAAGACCACTGTGAAAACAATCCACCAGGAAATTATACTTGCCATTGTCCAACCAACTTTTATGGAGATGGCAGAAAAGAGGGCAAAGGTTGCATACCAAAAAACAATTTCATTCGAATCATTGTAGGAGTTGGGGTGGGGTTCATAGTTTTACTGATCGGTAGCTCATGGCTGTACTTGGGTTACAAAAAGTGGAAGTTCATCCAAAAGAAAGAGAAGTTTTTTAAGAATAATGGAGGCTTAATACTTCAACAACACCTTTCTCAATGGCAGTCACCCGTTGACTCAGTCAAAATTTTCAGCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTTCGATGACAGCACGGTGGTCGGAATAGGTGGCTACGGCACTGTTCACAAAGGAGTGTTAGAGGGTGGTTCGGTTGTGGCCATTAAGAAATCAAAATTAGTGGACCAATCCCAAATTGACCAATTTATCAACGAAGTCATCATTCTGTCACAAATCAACCATCGACACGTGGTGCGACTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTGTACGAGTTCATCACCAATGGCACACTCTTCGACCACATCCATAACAACTCCCTCTCTTGGGAAGCTCGCTTGAAAATTGCTTCAGAAATTGCGGGCGTGATTTCTTATTTGCATTCTTCGGCTTCCACTCCGATCATCCATAGAGATATTAAGTCCACTAATATACTTTTGGATTCTAATCTTACTGCAAAAGTCTCTGACTTTGGTGCTTCAAAGTTGGTTCCAACGGATCAAAATCAGCTATCTACCATGGTACAAGGGACTCTTGGATATTTGGATCCTGAATATTTGTTGACGAGCGAGTTGACAGAAAAGAGCGACGTGTATAGCTTTGGAATTGTGCTTCTAGAGCTTATAACAGGCAAGAAGGCGGTGCGTTTTGATGGACCGGAAGCAGAGAGAAACCTGGCCATGTACGTTCTTTGTGCGATGAAAGAAGATCGGTTGGTAGAAGTTGTGGACAAAAGAATTGCAATAGGAACAAACTTTGATCAGATTAAAGAAGTGGCCAAACTAGCAAAAGAGTGTGTGAAAGTAAAAGGGGAGGAGAGACCAAGCATGAAGGAAGTAGCAATGGAGTTGGAGGGACTGAGAGTGATGCAGGTTGAACATTCATGGAATAATGAGAACAATTTGAACAGAGAAGAGACTGTAAATTTGTTGGATGGAGATTCACAGTCCACCCAATTATTTGTTGTTAGTGGCAGTATCAATCCAATGGACATGATGATAATAGCCATTTTGACAGTATTGGCTGCAGCATCAACAGCAGCAGCATCATCAGCTGGTTATCCAGCCAAACCCGGTTGCATCAACACATGCGGAAACTTGACGATTCCTTATCCGTTCGGAATGAGCGAAGAATGTTATCTCAATACGAATTTCTCCATAACCTGCAACACAACTCATTACCATCCTCCCCAGGCATTTGTGATGGGAAGCAACATCATGGTTACAAACATATCCATCCTCGACGGGGAGCTCGACATCTTGCAGTACACGGCCCAAGATTGTTACACAGCAAACGGCCCTTTATTCTCCAACCGTCCCACTCTCACCGTGCCCATGTTCACCATATCGAGCACCAAGAACGTGTTCACGGTCATGGGGTGCGATACTTACGCGTACATTTACGGGAGGCTCAAGGGGGAGACATACAAAACTGGGTGTATGGCTTTGTGTGAAAACAATGCAACTCTAAGTGATGGGACATGTTCAGGCAGTGGATGCTGTCAGTTGGAGATTCCTAATGGACTTAGGGATTTGGAGTTGGATGTTAGAAGTTTCAATAATCATTCTCAAGTGCTGAATTTCAATCCTTGTGGATATGCTTTTGTTGTCCAACGAGATAGCTTCAATTTTTCCAAAGAATATATTAGGGAGTTTGCCCAGCAAACTGTTCCATTGGTGCTTGATTGGACTATAATGGAAGGGAATGTTTGTGGACCAAATAGCAAAAAGACTAACTATCTTGATAATGTATCTGATTATCGATGCCAGTGTTTGGATGGCTTTGAGGGGAATCCATACCTCCCTCATGGTTGTCAAGATATAAATGAATGCGAGAATGGAAGCCATGACTGTGAATGGAATATCCAGTGTACAAACACACAAGGAAACTATACTTGCACTTGTCCTAAGAACTATAACGGAGATGGAAAAAAGGGCCGGAAAGGTTGCACCCGAAATTCCAAGTCTTTCATTTCAATCATTGTTGGAATTGGAGTGGGGGTCATAGTTTTAGTGATTGGTAGCACATGGTTGTATTTGGGTTACAAAAAGTGGAAATTCATCCAAAGCAAAGAGAAGTTTTTCAAGGAAAATGGAGGCTTAATTCTTCAACAACACCTTTCTCAACGGCAATCATCTGTTGACTCAGTCAAAATTTTCAGCCAAGAAGAGTTGGAGAAGGCGACAAACAAGTTCGATGACAGCACCGTGGTCGGAACAGGTGGCTACGGAACTGTTCACAAAGGAGTGTTAGAGGGTGGTTCAGTTGTGGCCATTAAGAAATCAAAATTAGTAGATCAATCCCAAATCGACCAATTCATCAACGAAGTCATCATTTTGTCACAAATCAACCATCGACACGTGGTACGCCTCTTAGGGTGCTGTTTGGAGATGGAAGTTCCATTGTTGGTGTACGAGTTCATCTCTAATGGCACACTCTTCGACCACATCCACAACAATTCCCTCTCTTGGCAAGCTCGTTTGAAAATTGCTTCAGAAATTGCAGGCGTAATTGCGTATTTGCATTCTTCTGCTGCCACTCCGATCATCCACAGAGATATTAAGTCCACTAATATACTCTTAGACAGTAATTTAACTGCAAAGGTTTCGGATTTTGGTGCTTCGAAGTTGGTTCCAATGGATCAAACTCACCTATCCACGATGGTGCAAGGGACTCTTGGATACTTGGATCCTGAATATTTGTTGACCAGTGAGTTAACAGAAAAGAGCGACGTGTACAGCTTCGGAATCGTACTTCTCGAGCTTATGACGAGCAAGAAGGCGGTGCGTTTCGATGGACCCGAAGCGGAAAGAAATCTAGCAACGTATGTCATTTCTGCAATGAAAGAAGGTCGGTTGGTAGATGTTTTGGATCAGAGAATGGCAAAAGAAAGGTGTTATGATCAGATTAATGAAGTGGCAAAACTAGCAAAAGAGTGTGTGAGAATAAAAGGGGAGGAGAGACCAAGCATGAAGGAGGTAGCAATGGAGTTGGAGGGGCTAAGAGTGATGCAGGTTGAGCATTCATGGGCTCAAAATAGTTTCAATGCAGAAGAGATTGCAAATTTGGTGGATGTACATTTAGAGTCCACCCAATTTGTTGTCAATGACAGTATCAATACTATGGACAATAGCATAAGGGCTCAGGCTTTGACAGGCCTTCCAGATGCAAGATGA 4377 43.39 MMLRVRLMLAILAVAAAASASSSIDSPVAKHDCEHKCGNVTIPYPFGTRDGCYLNSNFSITCNETHYDPPQAFLMNGNIMVTDISYISGELSILHSVSQVCEPASNVSTERELVYPFIPNLPAAPPFTVSSSKNRFTLVGCETIALIADGQNFGITGCFATCVDASLVQDGVCNGNGCCQFDIPSGQNMSAATSPLNATDNNVSASSNHCAYAFVSDQDKFHFKKSYVNHKSPDIAIPAVLEWSISNTTCDKSSNCICGPNSNKASFLPDGSQYRCQCWDGFQGNPYLEACQDINECENESHGCISKDHCENNPPGNYTCHCPTNFYGDGRKEGKGCIPKNNFIRIIVGVGVGFIVLLIGSSWLYLGYKKWKFIQKKEKFFKNNGGLILQQHLSQWQSPVDSVKIFSQEELEKATNKFDDSTVVGIGGYGTVHKGVLEGGSVVAIKKSKLVDQSQIDQFINEVIILSQINHRHVVRLLGCCLETQVPLLVYEFITNGTLFDHIHNNSLSWEARLKIASEIAGVISYLHSSASTPIIHRDIKSTNILLDSNLTAKVSDFGASKLVPTDQNQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRFDGPEAERNLAMYVLCAMKEDRLVEVVDKRIAIGTNFDQIKEVAKLAKECVKVKGEERPSMKEVAMELEGLRVMQVEHSWNNENNLNREETVNLLDGDSQSTQLFVVSGSINPMDMMIIAILTVLAAASTAAASSAGYPAKPGCINTCGNLTIPYPFGMSEECYLNTNFSITCNTTHYHPPQAFVMGSNIMVTNISILDGELDILQYTAQDCYTANGPLFSNRPTLTVPMFTISSTKNVFTVMGCDTYAYIYGRLKGETYKTGCMALCENNATLSDGTCSGSGCCQLEIPNGLRDLELDVRSFNNHSQVLNFNPCGYAFVVQRDSFNFSKEYIREFAQQTVPLVLDWTIMEGNVCGPNSKKTNYLDNVSDYRCQCLDGFEGNPYLPHGCQDINECENGSHDCEWNIQCTNTQGNYTCTCPKNYNGDGKKGRKGCTRNSKSFISIIVGIGVGVIVLVIGSTWLYLGYKKWKFIQSKEKFFKENGGLILQQHLSQRQSSVDSVKIFSQEELEKATNKFDDSTVVGTGGYGTVHKGVLEGGSVVAIKKSKLVDQSQIDQFINEVIILSQINHRHVVRLLGCCLEMEVPLLVYEFISNGTLFDHIHNNSLSWQARLKIASEIAGVIAYLHSSAATPIIHRDIKSTNILLDSNLTAKVSDFGASKLVPMDQTHLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELMTSKKAVRFDGPEAERNLATYVISAMKEGRLVDVLDQRMAKERCYDQINEVAKLAKECVRIKGEERPSMKEVAMELEGLRVMQVEHSWAQNSFNAEEIANLVDVHLESTQFVVNDSINTMDNSIRAQALTGLPDAR 1458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6797387 6814244 - Sed0011471.1 Sed01g0936 700240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0936 1458 CDD EGF_CA 1007 1042 - -
Sed01g0936 1458 ProSiteProfiles EGF-like domain profile. 1007 1042 IPR000742 -
Sed01g0936 1458 FunFam Wall-associated receptor kinase 2 1102 1207 - -
Sed01g0936 1458 ProSiteProfiles Protein kinase domain profile. 1132 1411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 Pfam Calcium-binding EGF domain 1007 1044 IPR049883 -
Sed01g0936 1458 Pfam Calcium-binding EGF domain 293 330 IPR049883 -
Sed01g0936 1458 ProSiteProfiles Protein kinase domain profile. 418 697 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 SUPERFAMILY EGF/Laminin 291 343 - -
Sed01g0936 1458 Pfam Protein tyrosine and serine/threonine kinase 423 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 Pfam Protein tyrosine and serine/threonine kinase 1137 1398 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 SMART egf_5 249 292 IPR000742 -
Sed01g0936 1458 SMART egf_5 1010 1051 IPR000742 -
Sed01g0936 1458 SMART egf_5 296 338 IPR000742 -
Sed01g0936 1458 Gene3D Transferase(Phosphotransferase) domain 1 494 710 - -
Sed01g0936 1458 Gene3D Transferase(Phosphotransferase) domain 1 1208 1424 - -
Sed01g0936 1458 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524(InterPro)
Sed01g0936 1458 FunFam Wall-associated receptor kinase 2 1208 1422 - -
Sed01g0936 1458 SMART egfca_6 293 338 IPR001881 GO:0005509(InterPro)
Sed01g0936 1458 SMART egfca_6 1007 1051 IPR001881 GO:0005509(InterPro)
Sed01g0936 1458 FunFam Wall-associated receptor kinase 2 494 708 - -
Sed01g0936 1458 SUPERFAMILY Protein kinase-like (PK-like) 1110 1399 IPR011009 -
Sed01g0936 1458 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 756 1411 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed01g0936 1458 SUPERFAMILY Protein kinase-like (PK-like) 396 685 IPR011009 -
Sed01g0936 1458 SUPERFAMILY EGF/Laminin 1006 1042 - -
Sed01g0936 1458 ProSitePatterns Protein kinases ATP-binding region signature. 1138 1161 IPR017441 GO:0005524(InterPro)
Sed01g0936 1458 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Sed01g0936 1458 CDD STKc_IRAK 1138 1401 - -
Sed01g0936 1458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1249 1261 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 ProSitePatterns Calcium-binding EGF-like domain signature. 1007 1033 IPR018097 GO:0005509(InterPro)
Sed01g0936 1458 Gene3D Phosphorylase Kinase; domain 1 390 493 - -
Sed01g0936 1458 Gene3D Phosphorylase Kinase; domain 1 1103 1207 - -
Sed01g0936 1458 SMART serkin_6 418 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 SMART serkin_6 1132 1401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0936 1458 Gene3D Laminin 965 1008 - -
Sed01g0936 1458 CDD STKc_IRAK 424 687 - -
Sed01g0936 1458 CDD EGF_CA 293 329 - -
Sed01g0936 1458 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1024 1035 IPR000152 -
Sed01g0936 1458 FunFam Wall-associated receptor kinase 2 388 493 - -
Sed01g0936 1458 Gene3D Laminin 1009 1045 - -
Sed01g0936 1458 Pfam Wall-associated receptor kinase galacturonan-binding 33 93 IPR025287 GO:0030247(InterPro)
Sed01g0936 1458 Pfam Wall-associated receptor kinase galacturonan-binding 760 818 IPR025287 GO:0030247(InterPro)
Sed01g0936 1458 Gene3D Laminin 244 338 - -
Sed01g0936 1458 FunFam Fibrillin 2 1002 1047 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0934 Sed-Chr1:6757701 Sed01g0936 Sed-Chr1:6797387 1.60E-239 dispersed
Sed01g0936 Sed-Chr1:6797387 Sed01g0940 Sed-Chr1:6879504 0.00E+00 dispersed
Sed14g0798 Sed-Chr14:14053184 Sed01g0936 Sed-Chr1:6797387 1.90E-70 dispersed
Sed14g0799 Sed-Chr14:14053184 Sed01g0936 Sed-Chr1:6797387 1.90E-70 dispersed
Sed01g0935 Sed-Chr1:6772169 Sed01g0936 Sed-Chr1:6797387 0.00E+00 tandem
Sed01g0936 Sed-Chr1:6797387 Sed01g0937 Sed-Chr1:6830411 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78581 PF00069 Pkinase 3.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0936 - - - 0.0