Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0937 ATGATCCTTGAGCGGCTGATCATGGTGGTGATATCAATTTGTGCAGTAGCTTCATCAGCAGCCTCAAATATTGGATATCCAGCCTTACCCAATTGCAAAAATAAATGCGGAAACTTGACGATTCCTTATCCGTTCGGAATGAGCGAAGAATGTTATCTCAATACGAATTTCTCCATAACCTGCAACACAACTCATTACCATCCTCCCCAGGCATTTGTGATGGGAAGCAACATCATGGTTACAAACATATCCATCCTTGACGGGGAGCTCGACATCTTGCAGTACACGGCCCAAGATTGTTACACAGCAAACGGCCCTTTATTCTCCAACCGTCCCACTCTCACCGTGCCCATGTTCACCATATCGAGCACCAAGAACGTGTTCACGGTCATGGGGTGCGATACTTACGCGTACATTTACGGGAGGCTCAAGGGGGAGACATACAAAACTGGGTGTATGGCTTTGTGTGAAAACAATGCAACTCTAAGTGATGGGACATGTTCAGGCAGTGGATGCTGTCAGTTGGAGATTCCTAAAGGACTTAGGGATTTGGAGTTGGATGTTAGAAGTTTCAATAATCATTCTCAAGTGCTGAATTTCAATCCTTGTGGATATGCTTTTGTTGTCCAACGAGATAGCTTCAATTTTTCCAAAGAATATATTAGGGAGTTTGCCCAGCAAACTGTTCCATTGGTGCTTGATTGGACTATAATGGAAGGGAATGTTTGTGGACCAAATAGCAAAAAGACTAACTATCTTGATAATGTATCTGATTATCGATGCCAGTGTTTGGATGGCTTTGAGGGGAATCCATACCTCCCTCATGGTTGTCAAGATATAAATGAATGCGAGAATGGAAGCCATGACTGTGAATGGAATATCCAGTGTACAAACACACAAGGAAACTATACTTGCACTTGTCCTAAGAACTATAACGGAGATGGAAAAAAGGGCCGGAAAGGTTGCACCCGAAATTCCAAGTCTTTCATTTCAATCATTGTTGGAATTGGAGTGGGGGTCATAGTTTTAGTGATTGGTAGCACATGGTTGTATTTGGGTTACAAAAAGTGGAAATTCATCCAAAGCAAAGAGAAGTTTTTCAAGGAAAATGGAGGCTTAATTCTTCAACAACACCTTTCTCAACGGCAATCATCTGTTGACTCAGTCAAAATTTTCAGCCAAGAAGAGTTGGAGAAGGCGACAAACAAGTTCGATGACAGCACCGTGGTCGGAACCGGTGGCTACGGAACGGTTCACAAAGGAGTGTTAGAGGGTGGTTCAGTTGTAGCCATTAAGAAATCAAAATTAGTAGATCAATCCCAAATCGACCAATTCATCAACGAAGTCATCATTTTGTCACAAATCAACCATCGACACGTGGTACGCCTCTTAGGGTGCTGTTTGGAGACGGAAGTTCCATTGTTGGTGTACGAGTTCATCTCTAATGGCACACTCTTCGACCACATCCACAACAATTCCCTCTCTTGGCAAGCTCGTTTGAAAATTGCTTCAGAAATTGCAGGCGTAATTGCGTATTTGCATTCTTCTGCTGCCACTCCGATCATCCACAGAGATATTAAGTCCACTAATATACTCTTAGACAGTAATTTAACTGCAAAGGTTTCGGATTTTGGTGCTTCGAAGTTGGTTCCAATGGATCAAACTCACCTATCCACGATGGTGCAAGGGACTCTTGGATACTTGGATCCTGAATATTTGTTGACCAGTGAGTTAACAGAAAAGAGCGACGTGTACAGCTTCGAATCGTACTTCTCGAGCTTATGA 1785 42.86 MILERLIMVVISICAVASSAASNIGYPALPNCKNKCGNLTIPYPFGMSEECYLNTNFSITCNTTHYHPPQAFVMGSNIMVTNISILDGELDILQYTAQDCYTANGPLFSNRPTLTVPMFTISSTKNVFTVMGCDTYAYIYGRLKGETYKTGCMALCENNATLSDGTCSGSGCCQLEIPKGLRDLELDVRSFNNHSQVLNFNPCGYAFVVQRDSFNFSKEYIREFAQQTVPLVLDWTIMEGNVCGPNSKKTNYLDNVSDYRCQCLDGFEGNPYLPHGCQDINECENGSHDCEWNIQCTNTQGNYTCTCPKNYNGDGKKGRKGCTRNSKSFISIIVGIGVGVIVLVIGSTWLYLGYKKWKFIQSKEKFFKENGGLILQQHLSQRQSSVDSVKIFSQEELEKATNKFDDSTVVGTGGYGTVHKGVLEGGSVVAIKKSKLVDQSQIDQFINEVIILSQINHRHVVRLLGCCLETEVPLLVYEFISNGTLFDHIHNNSLSWQARLKIASEIAGVIAYLHSSAATPIIHRDIKSTNILLDSNLTAKVSDFGASKLVPMDQTHLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFESYFSSL 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6830411 6834084 - Sed0024419.1 Sed01g0937 700241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0937 594 SUPERFAMILY EGF/Laminin 278 314 - -
Sed01g0937 594 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 588 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed01g0937 594 ProSiteProfiles Protein kinase domain profile. 404 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0937 594 SMART serkin_6 404 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0937 594 Pfam Calcium-binding EGF domain 279 316 IPR049883 -
Sed01g0937 594 CDD EGF_CA 279 314 - -
Sed01g0937 594 FunFam Fibrillin 2 274 319 - -
Sed01g0937 594 Gene3D Laminin 238 322 - -
Sed01g0937 594 FunFam Os07g0541700 protein 478 564 - -
Sed01g0937 594 Pfam Protein kinase domain 406 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0937 594 SUPERFAMILY Protein kinase-like (PK-like) 382 587 IPR011009 -
Sed01g0937 594 FunFam Wall-associated receptor kinase 2 374 479 - -
Sed01g0937 594 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247(InterPro)
Sed01g0937 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0937 594 ProSitePatterns Calcium-binding EGF-like domain signature. 279 305 IPR018097 GO:0005509(InterPro)
Sed01g0937 594 Gene3D Phosphorylase Kinase; domain 1 375 479 - -
Sed01g0937 594 ProSiteProfiles EGF-like domain profile. 279 314 IPR000742 -
Sed01g0937 594 ProSitePatterns Protein kinases ATP-binding region signature. 410 433 IPR017441 GO:0005524(InterPro)
Sed01g0937 594 Gene3D Transferase(Phosphotransferase) domain 1 480 589 - -
Sed01g0937 594 SMART egfca_6 279 323 IPR001881 GO:0005509(InterPro)
Sed01g0937 594 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 296 307 IPR000152 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0937 Sed-Chr1:6830411 Sed01g0940 Sed-Chr1:6879504 7.00E-271 dispersed
Sed01g0936 Sed-Chr1:6797387 Sed01g0937 Sed-Chr1:6830411 0.00E+00 tandem
Sed01g0937 Sed-Chr1:6830411 Sed01g0938 Sed-Chr1:6839777 5.40E-239 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78582 PF00069 Pkinase 4.40E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0937 - - - 0.0