Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0939 ATGGATTCAAGTGCCCCATTATTGCTCTTTTCCTCTAAATTGGAGTCCCAAAACCAACCCCCCAAACCACTCCCTTTTCTGGACAGTCCCCAATCAAACAAACCCCTCTTTGTACCTTCCAAATTCATTTGGCCAAAAGGGGACTTAGTAAAGGCTCATCAAAAGCTCACTGAACCACATGTCGACCTTCGGGGCTTCCTCGAGGGCGATAAAAAGGCAACCATCGAAGCTTCCGAACTCGTTCGGAAAGCCTGCTTGAAACATGGCTTCTTCCAAGTCATCAACCATGGCGTTGATCAAAATCTCTTGGCCACTGCCCTTCACAAAATGGGCTCTCTTTTTAACCTCCCTTTGAACCTTAAGACTAAGGCTTCTCATGGCAGCCCTGTAAAAATGTGGGGCTTTTCAACTGCACATTCTAATCGCTTTTCCTCTAAGCTTCCATGGAAGGAAACTTTCTCCTTTGGATTTGATCATTGCAATAGCGAACCAGCTGTTGTTAATTTCTTCAATTCGACTCTTGGCCACGAATTTGAAGAAATAGGGGATGTATATCAAAAGTACTGCGAAGCAATGAGAGATCTATCACTTGCATTAACGGAGCTTGTGGCCATAAGCTTAGGCGTGGAAAGGTCGCATTTTCGCAAGTTTTTCGAAGATGGAAGCTCCATTATGCGATTAAACAGCTACCCGATTTGCGAACAAGGCGGCGTGGCCCTGGGCACAGGGCCTCACTGCGATCCAACAGGGTTGACCATTCTGCACCAGGACCAGGTCGGCGGGCTCGAAGTCTTCGCCAACGACAAATGGCACACCGTTCCCCCTTATCAAAATACACTTGTCGTTAACATTGGTGACGTTTTCATGGCATTGTGCAATGGGGAATACAAAAGCTGCGTGCATAGAGCTGTGGTAAACAACCACAAGGAGAGAAGATCATTGGCATTTTTCCTTTGTCCGAGGAAGGACAAAGTGGTGAGGCCGCCCGAGAATCTTGTCGCCGACGATGACTCGAGGAAGTACCCTGATTTTTCGTGGTCGGAGCTGCTTGAATTTACGCAAAAATACTACAGAGCCGATGCTGTAACTCTTCAAAACTTCACCAAATGGGTTGTAACGTCCAGGCCTTGA 1131 47.04 MDSSAPLLLFSSKLESQNQPPKPLPFLDSPQSNKPLFVPSKFIWPKGDLVKAHQKLTEPHVDLRGFLEGDKKATIEASELVRKACLKHGFFQVINHGVDQNLLATALHKMGSLFNLPLNLKTKASHGSPVKMWGFSTAHSNRFSSKLPWKETFSFGFDHCNSEPAVVNFFNSTLGHEFEEIGDVYQKYCEAMRDLSLALTELVAISLGVERSHFRKFFEDGSSIMRLNSYPICEQGGVALGTGPHCDPTGLTILHQDQVGGLEVFANDKWHTVPPYQNTLVVNIGDVFMALCNGEYKSCVHRAVVNNHKERRSLAFFLCPRKDKVVRPPENLVADDDSRKYPDFSWSELLEFTQKYYRADAVTLQNFTKWVVTSRP 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6868309 6871242 - Sed0023917.1 Sed01g0939 700243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0939 376 PRINTS Isopenicillin N synthase signature 308 326 - -
Sed01g0939 376 PRINTS Isopenicillin N synthase signature 81 98 - -
Sed01g0939 376 PRINTS Isopenicillin N synthase signature 245 266 - -
Sed01g0939 376 SUPERFAMILY Clavaminate synthase-like 38 359 - -
Sed01g0939 376 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 320 IPR005123 -
Sed01g0939 376 Pfam non-haem dioxygenase in morphine synthesis N-terminal 59 165 IPR026992 -
Sed01g0939 376 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 39 350 IPR050231 GO:0009416(PANTHER)|GO:0009686(PANTHER)|GO:0009826(PANTHER)|GO:0009908(PANTHER)|GO:0016706(PANTHER)|GO:0045544(PANTHER)
Sed01g0939 376 Gene3D - 31 352 IPR027443 -
Sed01g0939 376 Pfam 2OG-Fe(II) oxygenase superfamily 223 320 IPR044861 -
Sed01g0939 376 FunFam Gibberellin 20 oxidase 2 31 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0939 K05282 - - csv:101209625 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0939 Sed-Chr1:6868309 Sed14g0259 Sed-Chr14:2737787 9.30E-112 dispersed
Sed01g0939 Sed-Chr1:6868309 Sed05g0567 Sed-Chr5:4112918 3.10E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24