Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0940 ATGAAGCGTCAAATTGTGACGCTTATTCGACTCATGATAGTAAACATATGGATATTAACAGCGGAAGCGATGACGGCGGCAAATACAACAGCGATAGTAGCATCGCAAGCCTTACCCGGGTGCGGTGAGTGGTGCGGGAACGTGCAGATTCCATATCCATTCGGCACAAGAGAAGGTTGTTACCTAAACAGAACATTCTTGATCACATGTAACACAACCGGTCCCAATTCTCAAACAGCATTTCTAAGAACCAGCAACATTCAAGTCAGAAATATATCACTCTCAGGAGAGCTTCAAATCTTGAGCTCGGTGGCTCAAGATTGCTACCCGAAAAACAACACTCGACGAGGATCCAACAGATCTCTCAGGTTATCTGCCTTTGATGTTTCCAGTACCAAGAACAAGTTCACCGTTATTGGCTGCGATACGTTCGCATATCTTTTCGGGCGAATCGATGGGCAGAGATACAGAACTGCGTGCGTGGCGACGTGTGATGATATTAGCACGGTTAAAGACGGGGCTTGCTCGGGCAACGGGTGTTGTCAATTGGATATTCCCAGTGGCTTGAGAGCTTTGAATTACATTGTGCGTAGCTTCAACAATCATACCGATGTGCTGAGTTTCAATCCTTGTGGGTATGCGTTTGTAAATGAAGAGGGAAAGTTTAATTTCTCGAAAAAGTATATTAGCAAGTTTCCCGAAAATAGAGTTTCGACGGTGCTTGATTGGAGCATTAGTAACACTACTTGTTCCACAGCTGGGAATAAAACCAATTGTATATGTGGGCTAAATAGCATGAGGGTTAATTTTCATCGTGATGGATCCGAATATCGTTGTCGGTGCTTGGAAGGTTTCGAGGGGAATCCGTATCTTCCTCAAGGTTGCCAAGATATAGATGAGTGCAAGGATGAAAGGCTGAATGACTGTAAGTATGAGTGTGTTAACACAATAGGAAACTATACTTGCAATTGTCCCAAGGATTTTAAAGGAGATGGAAGACAAGGGGGAGAAGGTTGCACCAGAAACTCCAAGCCTTTCATTCAAATCATAATTGGAGTTTCTGTGGGATTCACAGTGTTAGTAGTTGGGAGTACCTGGTTATACTTAGGCTACAGAAAGTGGAGGTTCATTAAGTTAAAAGAGAAGTTTTTCGAGGAAAACGGAGGCTTAATGCTGCAACAACACCTTTCTCAATGGCAATCTTCCCCGGACATGGTCAGAATTTTCACCCAAGAGGAGCTAGACAAGGCCACAAACAAGTACGACGAAACCGCGGTGGTTGGAAAAGGTGGCTACGGTACCGTTTACAAAGGAGTATTAGCCGACGGTTCGATAGTCGCAATTAAGAAATCAAAATTAGTAGACCAGTCCCAAACATCCCAATTCATCAACGAAGTCATTGTTCTATCGCAAATCAACCACCGACACGTGGTTCGACTCTTAGGGTGTTGTTTGGAGACACAAGTTCCATTGTTGGTCTACGAGTTCATCACCAATGGCACACTTTACGACTACATCCATGAAAAAACCAATCACGATTCTCTTTCATGGGAAGATCGCTTGAGAATTGCATCAGAAACTGCAGGGGTCATTTCATATTTGCATTCCTCTGCTTCCACTCCAATTATTCATAGAGATATTAAGACGACAAACATACTTTTAGATGAGAACTGCATTGCGAAGGTCTCGGATTTCGGTGCTTCAAAGTTGGTTCCAGTGGATCAAACTCAATTGTCGACAATGGTGCAAGGGACTCTAGGATATCTCGACCCAGAGTATTTGTTAACGAGTGAGTTGACAGAGAAAAGTGACGTATATAGCTTTGGAATTGTGCTTTTAGAGCTTATAACGGGAAAGAAGGCGGTGAGTTTCGAGGGGCCGGAAGCGGAGAGAAATCTAGCCATGTACGTTCTATGTGCAATGAAGGATGATCATTTGAGAGAAGTCGTGGAGAAGGGAATGGCGACGGAAGCGAACTTTGAGCAGATAAAAGAAGTGGCTAAGTTGGCAAGAAAGTGTTTGAGAATAAGTGGGGAGGAGCGGCCGAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGATTGAGGGTGATGATTGAGCATTCATGGGCTAATGATCAAAACTTAGCGCACCCAGGTGAGATGCTGGCTTATTTGTTGGACGATGGAGCTTTAGGATCGACATCGAGCGAGTTTGGCGCCGGTGGGAGTTCGCATGTTGTGGACGATAGCATGAAAAATGTAAAATTATTCAAAAATAAAATTTATATGATGATGATGATGATAGCCATTTTGATAGTGGGTGCAGCAGAAGCAGCTGCAGAATCATCAATTGGTTATCCAGCCAAACCCGGTTGCAACAATACATGTGGAAACTTGACAATTCCTTATCCGTTCGGGATGAGCGAAGATTGTTATCTCAATACAAATTTCTCCATAACCTGCAACACAACTCATTACAATCCTCCACAGGCATTTCTGAGGAGAAGCAACATTATGGTTACAAATATATCCATCCCGGACGGAGAGCTTGACATTTTGAACTACATAGCCCGAGATTGCTACCCAAAAAATGGCCCCAAAAGCTCCATAAAACCCACACTCAAGGTGTCCAAGTTTGCAATATCCAGCACGAGGAACAAGTTCACGGTCATTGGCTGCGATACTTACGCTTATATTTCTGGCCAACTTAGGGGCGACAATTATACAAGTGGGTGTATGGCTTTGTGTGAAAATAATTTAACTCTCAGAGATGGAGCCTGCTCTGGCAATGGATGCTGTCAGTTGGAGATTCCCCCAGGCCTTCAAAATTTAAACGTGACAGTCAAAAGCTTCTATAATCACAAATTTGTACAGGACTTCAACCCTTGTGGCTATGCTTTTGTAATCGAACAATCCAACTTCAGTTTTTCCAAAACCTATATTCAAAATTTTACCCAACGGTCTGTTCCTCTGGTGCTTGATTGGACCATAAATGCTGACGATATATGCGGACCAAACACCGACAGGACTAACTATCCCGATGATTATGGATCTCAATATCGTTGCCACTGCTTGCAAGGCTTTCAGGGGAATCCATATCTTCCCCAAGGTTGTCAAGATATCAACGAATGCGAAACCGGAAGTCATGAGTGTGGATCGAAAGATTGGTGTGTTAACAAACAAGGATACCATACTTGCATTTGTCCCAACAACTATCACGGAGATGGCAAAATGAACGGGAAAGGTTGCACCCCAAATTCCAAGTCTTTTCTTTCCATCATTATTGGAATTGCGGTGGGGCTCGTAGTTTTACTGATCGGTAGCTCATGGCTGTACTTGGGTTACAAAAAGTGGAAGTTCATCCAAAAGAAAGAGAAGTTTTTCAAGAATAATGGAGGCTTAATACTTCAACAACACCTTTCTCAGTGGCAATCACCTGTTGACTCGGTCAAAATATTCAGCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTTCGATGATAGCACAGTGGTCGGAACAGGTGGCTATGGCACTGTTCACAAAGGAGTGTTAGAGGGTGGATCGGTTGTGGCCATTAAGAAATCAAAATTAGTGGACCAATCCCAAATTGACCAATTTATCAACGAAGTCATCATTCTGTCACAAATCAACCATCGACACGTGGTGCGACTCTTAGGATGTTGTTTGGAGACGCAAGTTCCATTGTTGGTGTACGAGTTCATCGCCAATGGCACACTCTTCGACCACATCCATAACAACTCCCTCTCTTGGGAAGCTCGCTTGAAAATTGCTTCAGAAATTGCGGGCGTGATTTCTTATTTGCATTCTTCGGCTTCCACTCCGATCATCCATAGAGATATTAAGTCCACTAATATACTTTTGGATGCTAATCTTACTGCAAAAGTCTCTGACTTTGGTGCTTCAAAGTTGGTTCCAACGGATCAAAATCAACTATCTACAATGGTACAAGGGACTCTTGGATATTTAGACCCTGAATATTTGTTAACGAGCGAATTGACAGAAAAGAGCGACGTGTATAGCTTTGGAATTGTACTTCTAGAGCTTATAACAGGCAAGAAGGCAGTGCGTTTTGATGGACTGGAAGTAGAGAGAAACCTAGCCATGTACGTTCTTTGTGCGATGAAAAAAGATCAGTTGGTAGAAGTTGTGGACAAAAGTATGACAATAGAAAGAAATTTTGATCAGATTAAAGAAGTGGCGAAACTCGCAAAAGAGTGTGTGAAAATAAAAGGGGAGGAGAGACCAAGCATGAAGGAAGTAGCAATGGAGCTGGAGGGACTAAGAGTGATGCAAGTTGAACATTCATGGAGTATTCAGAACAATTTCAACAGAGAAGAGATTGTAAATTTGTTGGATGGAGATTCAGAGCCCAGCCAATTTGTGGATAGTGATAGTATAAATGCTATGGACAACAGCATAAAGGCTCAAGCTTTGACACACATCTCGGACGCAAGATGA 4458 42.98 MKRQIVTLIRLMIVNIWILTAEAMTAANTTAIVASQALPGCGEWCGNVQIPYPFGTREGCYLNRTFLITCNTTGPNSQTAFLRTSNIQVRNISLSGELQILSSVAQDCYPKNNTRRGSNRSLRLSAFDVSSTKNKFTVIGCDTFAYLFGRIDGQRYRTACVATCDDISTVKDGACSGNGCCQLDIPSGLRALNYIVRSFNNHTDVLSFNPCGYAFVNEEGKFNFSKKYISKFPENRVSTVLDWSISNTTCSTAGNKTNCICGLNSMRVNFHRDGSEYRCRCLEGFEGNPYLPQGCQDIDECKDERLNDCKYECVNTIGNYTCNCPKDFKGDGRQGGEGCTRNSKPFIQIIIGVSVGFTVLVVGSTWLYLGYRKWRFIKLKEKFFEENGGLMLQQHLSQWQSSPDMVRIFTQEELDKATNKYDETAVVGKGGYGTVYKGVLADGSIVAIKKSKLVDQSQTSQFINEVIVLSQINHRHVVRLLGCCLETQVPLLVYEFITNGTLYDYIHEKTNHDSLSWEDRLRIASETAGVISYLHSSASTPIIHRDIKTTNILLDENCIAKVSDFGASKLVPVDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKDDHLREVVEKGMATEANFEQIKEVAKLARKCLRISGEERPSMKEVAMELEGLRVMIEHSWANDQNLAHPGEMLAYLLDDGALGSTSSEFGAGGSSHVVDDSMKNVKLFKNKIYMMMMMIAILIVGAAEAAAESSIGYPAKPGCNNTCGNLTIPYPFGMSEDCYLNTNFSITCNTTHYNPPQAFLRRSNIMVTNISIPDGELDILNYIARDCYPKNGPKSSIKPTLKVSKFAISSTRNKFTVIGCDTYAYISGQLRGDNYTSGCMALCENNLTLRDGACSGNGCCQLEIPPGLQNLNVTVKSFYNHKFVQDFNPCGYAFVIEQSNFSFSKTYIQNFTQRSVPLVLDWTINADDICGPNTDRTNYPDDYGSQYRCHCLQGFQGNPYLPQGCQDINECETGSHECGSKDWCVNKQGYHTCICPNNYHGDGKMNGKGCTPNSKSFLSIIIGIAVGLVVLLIGSSWLYLGYKKWKFIQKKEKFFKNNGGLILQQHLSQWQSPVDSVKIFSQEELEKATNKFDDSTVVGTGGYGTVHKGVLEGGSVVAIKKSKLVDQSQIDQFINEVIILSQINHRHVVRLLGCCLETQVPLLVYEFIANGTLFDHIHNNSLSWEARLKIASEIAGVISYLHSSASTPIIHRDIKSTNILLDANLTAKVSDFGASKLVPTDQNQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRFDGLEVERNLAMYVLCAMKKDQLVEVVDKSMTIERNFDQIKEVAKLAKECVKIKGEERPSMKEVAMELEGLRVMQVEHSWSIQNNFNREEIVNLLDGDSEPSQFVDSDSINAMDNSIKAQALTHISDAR 1485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6879504 6893134 + Sed0006853.1 Sed01g0940 700244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0940 1485 Gene3D Phosphorylase Kinase; domain 1 1130 1233 - -
Sed01g0940 1485 Gene3D Phosphorylase Kinase; domain 1 393 496 - -
Sed01g0940 1485 ProSitePatterns Calcium-binding EGF-like domain signature. 297 322 IPR018097 GO:0005509(InterPro)
Sed01g0940 1485 CDD EGF_CA 297 331 - -
Sed01g0940 1485 SUPERFAMILY EGF/Laminin 1032 1068 - -
Sed01g0940 1485 CDD EGF_CA 1033 1068 - -
Sed01g0940 1485 SUPERFAMILY Protein kinase-like (PK-like) 399 692 IPR011009 -
Sed01g0940 1485 Pfam Protein tyrosine and serine/threonine kinase 426 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 Pfam Protein tyrosine and serine/threonine kinase 1163 1424 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 313 324 IPR000152 -
Sed01g0940 1485 CDD STKc_IRAK 1164 1427 - -
Sed01g0940 1485 SUPERFAMILY EGF/Laminin 296 332 - -
Sed01g0940 1485 Gene3D Transferase(Phosphotransferase) domain 1 497 710 - -
Sed01g0940 1485 Gene3D Transferase(Phosphotransferase) domain 1 1234 1448 - -
Sed01g0940 1485 Gene3D Laminin 990 1076 - -
Sed01g0940 1485 Gene3D Laminin 244 339 - -
Sed01g0940 1485 ProSiteProfiles Protein kinase domain profile. 421 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 CDD STKc_IRAK 427 694 - -
Sed01g0940 1485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 FunFam Wall-associated receptor kinase 2 497 712 - -
Sed01g0940 1485 Pfam Calcium-binding EGF domain 1033 1070 IPR049883 -
Sed01g0940 1485 Pfam Calcium-binding EGF domain 297 332 IPR049883 -
Sed01g0940 1485 Pfam Wall-associated receptor kinase galacturonan-binding 41 96 IPR025287 GO:0030247(InterPro)
Sed01g0940 1485 Pfam Wall-associated receptor kinase galacturonan-binding 785 844 IPR025287 GO:0030247(InterPro)
Sed01g0940 1485 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 781 1436 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed01g0940 1485 FunFam Fibrillin 2 292 335 - -
Sed01g0940 1485 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
Sed01g0940 1485 FunFam Wall-associated receptor kinase 2 391 496 - -
Sed01g0940 1485 FunFam Wall-associated receptor kinase 2 1128 1233 - -
Sed01g0940 1485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1275 1287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 FunFam Fibrillin 2 1028 1072 - -
Sed01g0940 1485 ProSitePatterns Protein kinases ATP-binding region signature. 1164 1187 IPR017441 GO:0005524(InterPro)
Sed01g0940 1485 SMART egfca_6 1033 1077 IPR001881 GO:0005509(InterPro)
Sed01g0940 1485 SMART egfca_6 297 340 IPR001881 GO:0005509(InterPro)
Sed01g0940 1485 SMART egf_5 300 340 IPR000742 -
Sed01g0940 1485 SMART egf_5 249 296 IPR000742 -
Sed01g0940 1485 SMART egf_5 983 1032 IPR000742 -
Sed01g0940 1485 SUPERFAMILY Protein kinase-like (PK-like) 1136 1425 IPR011009 -
Sed01g0940 1485 ProSiteProfiles Protein kinase domain profile. 1158 1437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 FunFam Wall-associated receptor kinase 2 1234 1447 - -
Sed01g0940 1485 SMART serkin_6 1158 1427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 SMART serkin_6 421 698 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0940 1485 ProSiteProfiles EGF-like domain profile. 297 334 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0935 Sed-Chr1:6772169 Sed01g0940 Sed-Chr1:6879504 0.00E+00 dispersed
Sed01g0936 Sed-Chr1:6797387 Sed01g0940 Sed-Chr1:6879504 0.00E+00 dispersed
Sed01g0937 Sed-Chr1:6830411 Sed01g0940 Sed-Chr1:6879504 7.00E-271 dispersed
Sed01g0938 Sed-Chr1:6839777 Sed01g0940 Sed-Chr1:6879504 0.00E+00 dispersed
Sed01g0940 Sed-Chr1:6879504 Sed10g2083 Sed-Chr10:37283960 2.30E-198 dispersed
Sed01g0940 Sed-Chr1:6879504 Sed01g0942 Sed-Chr1:6929149 2.40E-267 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78584 PF07714 PK_Tyr_Ser-Thr 1.50E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0940 - - - 0.0